General info
I created this website to track the progress with the sweetgum
genetic study.
There are 7 parts:
- Libraries, dataset loading, and data wrangling.
- SAS code.
- Survival rate plots.
- Groundline diameter (GLD) plots and stats.
- Tree height plots and stats.
- DBH plots and stats.
- Live crown height plots and stats.
Data Wrangling
library(tidyverse)
## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr 1.1.4 ✔ readr 2.1.4
## ✔ forcats 1.0.0 ✔ stringr 1.5.1
## ✔ ggplot2 3.4.4 ✔ tibble 3.2.1
## ✔ lubridate 1.9.3 ✔ tidyr 1.3.0
## ✔ purrr 1.0.2
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## ✖ dplyr::filter() masks stats::filter()
## ✖ dplyr::lag() masks stats::lag()
## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
library(ggpubr)
library(plotly)
##
## Attaching package: 'plotly'
##
## The following object is masked from 'package:ggplot2':
##
## last_plot
##
## The following object is masked from 'package:stats':
##
## filter
##
## The following object is masked from 'package:graphics':
##
## layout
library(htmltools)
hane_crown <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_crown.csv",
header = T)
hane_gld <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_gld.csv",
header = T)
hane_dbh <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_dbh.csv",
header = T)
hane_ht <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_ht.csv",
header = T)
hane_survival_year <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_survival_year.csv",
header = T)
hane_survival_year_family <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_survival_year_family.csv",
header = T)
hane_survival_year_location <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_survival_year_location.csv",
header = T)
hane_survival_year_location_family <- read.csv("https://raw.githubusercontent.com/azd169/R-datasets/main/hane_survival_year_location_family.csv",
header = T)
hane_crown <- hane_crown %>%
mutate(Year = fct_relevel(Year, c("Fifth", "Sixth", "Seventh")))
hane_gld <- hane_gld %>%
mutate(Year = fct_relevel(Year, c("Initial", "First", "Second")))
hane_dbh <- hane_dbh %>%
mutate(Year = fct_relevel(Year, c("Third", "Fourth", "Fifth", "Sixth", "Seventh")))
hane_ht <- hane_ht %>%
mutate(Year = fct_relevel(Year, c("Initial", "First", "Second", "Third", "Fourth", "Fifth", "Sixth", "Seventh")))
hane_survival_year <- hane_survival_year %>%
mutate(Year = fct_relevel(Year, c("Initial", "First", "Second")))
hane_survival_year_family <- hane_survival_year_family %>%
mutate(Year = fct_relevel(Year, c("Initial", "First", "Second")))
hane_survival_year_location <- hane_survival_year_location %>%
mutate(Year = fct_relevel(Year, c("Initial", "First", "Second")))
hane_survival_year_location_family <- hane_survival_year_location_family %>%
dplyr::mutate(ID = paste(Location, Year, sep = ", ")) %>%
mutate(ID = fct_relevel(ID, c("Hill Farm, Initial", "Hill Farm, First", "Hill Farm, Second",
"LA Tech, Initial", "LA Tech, First", "LA Tech, Second")))
SAS Code
Procedure:
External trees were removed from the analysis and all the Variables
were averaged at plot level. A unique ID was created combining Genotype,
Location, and Block (GLD in the SAS code)
Datasets used:
- WORK.DBH for DBH
- WORK.GLD for GLD
- WORK.HEIGHT for tree height
- WORK.CROWN for crown height
Here are the SAS models:
- GLD
PROC GLIMMIX DATA = GLD H PLOTS = ALL; CLASS Year Location Block
Family GLB; MODEL GLD = Year|Location|Family / SOLUTION DDFM = KR;
RANDOM intercept / SOLUTION SUBJECT = GLB TYPE = AR(1) CL; LSMEANS
Location Family Year * Location Year * Family/ ADJUST = TUKEY LINES; ODS
GRAPHICS OFF; RUN;
- Height
PROC GLIMMIX DATA = HEIGHT H PLOTS = ALL; CLASS Year Location Block
Family GLB; MODEL Height = Year|Location|Family / SOLUTION DDFM = KR;
RANDOM intercept / SOLUTION SUBJECT = GLB TYPE = AR(1) CL; LSMEANS
Family/ ADJUST = TUKEY LINES; SLICE Year * Location / SLICEBY = Year
ADJUST = TUKEY LINES DIFF; SLICE Year * Family / SLICEBY = Year ADJUST =
TUKEY LINES DIFF; ODS GRAPHICS OFF; RUN;
- DBH
PROC GLIMMIX DATA = DBH H PLOTS = ALL; CLASS Year Location Block
Family GLB; MODEL DBH = Year|Location|Family / SOLUTION DDFM = KR;
RANDOM intercept / SOLUTION SUBJECT = GLB TYPE = AR(1) CL; LSMEANS
Family/ ADJUST = TUKEY LINES; SLICE Year * Location / SLICEBY = Year
ADJUST = TUKEY LINES DIFF; SLICE Year * Family / SLICEBY = Year ADJUST =
TUKEY LINES DIFF; ODS GRAPHICS OFF; RUN;
- Crown Height
PROC GLIMMIX DATA = CROWN H PLOTS = ALL; CLASS Year Location Block
Family GLB; MODEL CROWN = Year|Location|Family / SOLUTION DDFM = KR;
RANDOM intercept / SOLUTION SUBJECT = GLB TYPE = AR(1) CL; LSMEANS
Family/ ADJUST = TUKEY LINES; SLICE Year * Location / SLICEBY = Year
ADJUST = TUKEY LINES DIFF; SLICE Year * Family / SLICEBY = Year ADJUST =
TUKEY LINES DIFF; ODS GRAPHICS OFF; RUN;
SAS Output GLD
htmltools::includeHTML("https://raw.githubusercontent.com/azd169/SAS_outputs/main/hane-results-GLD.html")
## Warning: `includeHTML()` was provided a `path` that appears to be a complete HTML document.
## ✖ Path: https://raw.githubusercontent.com/azd169/SAS_outputs/main/hane-results-GLD.html
## ℹ Use `tags$iframe()` to include an HTML document. You can either ensure `path` is accessible in your app or document (see e.g. `shiny::addResourcePath()`) and pass the relative path to the `src` argument. Or you can read the contents of `path` and pass the contents to `srcdoc`.
Results: hane.sas
Results: hane.sas
The Glimmix Procedure
Model Information
| WORK.GLD |
| GLD |
| Gaussian |
| Identity |
| Default |
| GLB |
| Restricted Maximum Likelihood |
| Kenward-Roger |
| Kenward-Roger |
Class Level Information
| 3 |
First Initial Second |
| 2 |
Hill Farm LA Tech |
| 4 |
1 2 3 4 |
| 6 |
AGH2 AGH25 AGHS1 AGHS2 AGHS3 AGHS4 |
| 48 |
AGH25_Hill Farm_1 AGH25_Hill Farm_2 AGH25_Hill Farm_3 AGH25_Hill Farm_4 AGH25_LA Tech_1 AGH25_LA Tech_2 AGH25_LA Tech_3 AGH25_LA Tech_4 AGH2_Hill Farm_1 AGH2_Hill Farm_2 AGH2_Hill Farm_3 AGH2_Hill Farm_4 AGH2_LA Tech_1 AGH2_LA Tech_2 AGH2_LA Tech_3 AGH2_LA Tech_4 AGHS1_Hill Farm_1 AGHS1_Hill Farm_2 AGHS1_Hill Farm_3 AGHS1_Hill Farm_4 AGHS1_LA Tech_1 AGHS1_LA Tech_2 AGHS1_LA Tech_3 AGHS1_LA Tech_4 AGHS2_Hill Farm_1 AGHS2_Hill Farm_2 AGHS2_Hill Farm_3 AGHS2_Hill Farm_4 AGHS2_LA Tech_1 AGHS2_LA Tech_2 AGHS2_LA Tech_3 AGHS2_LA Tech_4 AGHS3_Hill Farm_1 AGHS3_Hill Farm_2 AGHS3_Hill Farm_3 AGHS3_Hill Farm_4 AGHS3_LA Tech_1 AGHS3_LA Tech_2 AGHS3_LA Tech_3 AGHS3_LA Tech_4 AGHS4_Hill Farm_1 AGHS4_Hill Farm_2 AGHS4_Hill Farm_3 AGHS4_Hill Farm_4 AGHS4_LA Tech_1 AGHS4_LA Tech_2 AGHS4_LA Tech_3 AGHS4_LA Tech_4 |
Number of Observations
Dimensions
Optimization Information
| Dual Quasi-Newton |
| 2 |
| 2 |
| 1 |
| Profiled |
| Profiled |
| Data |
Iteration History
| 4 |
640.72210261 |
. |
1.46E-13 |
Convergence Status
| Convergence criterion (ABSGCONV=0.00001) satisfied. |
Hessian Matrix
| Variance |
GLB |
80.7379 |
 |
| AR(1) |
GLB |
 |
 |
Fit Statistics
| 640.72 |
| 646.72 |
| 646.95 |
| 652.34 |
| 655.34 |
| 648.84 |
| 1275.07 |
| 11.81 |
Covariance Parameter Estimates
| GLB |
2.5015 |
1.6529 |
| GLB |
0 |
. |
| Â |
11.8062 |
1.9677 |
Solutions for Fixed Effects
| Â |
 |
 |
48.3072 |
1.8913 |
101.8 |
25.54 |
<.0001 |
| First |
 |
 |
-34.9458 |
2.4296 |
72 |
-14.38 |
<.0001 |
| Initial |
 |
 |
-43.5014 |
2.4296 |
72 |
-17.90 |
<.0001 |
| Second |
 |
 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
 |
-8.7071 |
2.6747 |
101.8 |
-3.26 |
0.0015 |
| Â |
LA Tech |
 |
0 |
. |
. |
. |
. |
| First |
Hill Farm |
 |
9.0771 |
3.4360 |
72 |
2.64 |
0.0101 |
| First |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Initial |
Hill Farm |
 |
9.6024 |
3.4360 |
72 |
2.79 |
0.0067 |
| Initial |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Â |
 |
AGH2 |
-12.1855 |
2.6747 |
101.8 |
-4.56 |
<.0001 |
| Â |
 |
AGH25 |
-6.4656 |
2.6747 |
101.8 |
-2.42 |
0.0174 |
| Â |
 |
AGHS1 |
-0.8208 |
2.6747 |
101.8 |
-0.31 |
0.7596 |
| Â |
 |
AGHS2 |
2.9486 |
2.6747 |
101.8 |
1.10 |
0.2729 |
| Â |
 |
AGHS3 |
-1.5495 |
2.6747 |
101.8 |
-0.58 |
0.5637 |
| Â |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
 |
AGH2 |
9.1584 |
3.4360 |
72 |
2.67 |
0.0095 |
| First |
 |
AGH25 |
3.8052 |
3.4360 |
72 |
1.11 |
0.2718 |
| First |
 |
AGHS1 |
-0.1953 |
3.4360 |
72 |
-0.06 |
0.9548 |
| First |
 |
AGHS2 |
-2.9219 |
3.4360 |
72 |
-0.85 |
0.3979 |
| First |
 |
AGHS3 |
0.4433 |
3.4360 |
72 |
0.13 |
0.8977 |
| First |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
 |
AGH2 |
12.1499 |
3.4360 |
72 |
3.54 |
0.0007 |
| Initial |
 |
AGH25 |
6.5162 |
3.4360 |
72 |
1.90 |
0.0619 |
| Initial |
 |
AGHS1 |
0.5714 |
3.4360 |
72 |
0.17 |
0.8684 |
| Initial |
 |
AGHS2 |
-3.2294 |
3.4360 |
72 |
-0.94 |
0.3504 |
| Initial |
 |
AGHS3 |
1.6059 |
3.4360 |
72 |
0.47 |
0.6417 |
| Initial |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
 |
AGH2 |
0 |
. |
. |
. |
. |
| Second |
 |
AGH25 |
0 |
. |
. |
. |
. |
| Second |
 |
AGHS1 |
0 |
. |
. |
. |
. |
| Second |
 |
AGHS2 |
0 |
. |
. |
. |
. |
| Second |
 |
AGHS3 |
0 |
. |
. |
. |
. |
| Second |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
AGH2 |
6.2013 |
3.7826 |
101.8 |
1.64 |
0.1042 |
| Â |
Hill Farm |
AGH25 |
1.1020 |
3.7826 |
101.8 |
0.29 |
0.7714 |
| Â |
Hill Farm |
AGHS1 |
2.9179 |
3.7826 |
101.8 |
0.77 |
0.4423 |
| Â |
Hill Farm |
AGHS2 |
-3.6520 |
3.7826 |
101.8 |
-0.97 |
0.3366 |
| Â |
Hill Farm |
AGHS3 |
-1.4682 |
3.7826 |
101.8 |
-0.39 |
0.6987 |
| Â |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
Hill Farm |
AGH2 |
-4.4378 |
4.8593 |
72 |
-0.91 |
0.3641 |
| First |
Hill Farm |
AGH25 |
1.3168 |
4.8593 |
72 |
0.27 |
0.7872 |
| First |
Hill Farm |
AGHS1 |
0.3735 |
4.8593 |
72 |
0.08 |
0.9389 |
| First |
Hill Farm |
AGHS2 |
5.2515 |
4.8593 |
72 |
1.08 |
0.2834 |
| First |
Hill Farm |
AGHS3 |
3.3401 |
4.8593 |
72 |
0.69 |
0.4941 |
| First |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
Hill Farm |
AGH2 |
-6.4171 |
4.8593 |
72 |
-1.32 |
0.1908 |
| Initial |
Hill Farm |
AGH25 |
-1.7337 |
4.8593 |
72 |
-0.36 |
0.7223 |
| Initial |
Hill Farm |
AGHS1 |
-2.6938 |
4.8593 |
72 |
-0.55 |
0.5810 |
| Initial |
Hill Farm |
AGHS2 |
3.1032 |
4.8593 |
72 |
0.64 |
0.5251 |
| Initial |
Hill Farm |
AGHS3 |
1.0562 |
4.8593 |
72 |
0.22 |
0.8285 |
| Initial |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGH2 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGH25 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGHS1 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGHS2 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGHS3 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
Type III Tests of Fixed Effects
| 2 |
72 |
1477.65 |
<.0001 |
| 1 |
36 |
5.24 |
0.0280 |
| 2 |
72 |
29.73 |
<.0001 |
| 5 |
36 |
3.78 |
0.0075 |
| 10 |
72 |
3.10 |
0.0025 |
| 5 |
36 |
0.56 |
0.7268 |
| 10 |
72 |
0.65 |
0.7634 |
Solution for Random Effects
| GLB AGH25_Hill Farm_1 |
1.0602 |
1.4398 |
8.699 |
0.74 |
0.4809 |
0.05 |
-2.2142 |
4.3346 |
| GLB AGH25_Hill Farm_2 |
-0.05423 |
1.4398 |
8.699 |
-0.04 |
0.9708 |
0.05 |
-3.3287 |
3.2202 |
| GLB AGH25_Hill Farm_3 |
-1.0796 |
1.4398 |
8.699 |
-0.75 |
0.4732 |
0.05 |
-4.3540 |
2.1949 |
| GLB AGH25_Hill Farm_4 |
0.07359 |
1.4398 |
8.699 |
0.05 |
0.9604 |
0.05 |
-3.2008 |
3.3480 |
| GLB AGH25_LA Tech_1 |
-0.5470 |
1.4398 |
8.699 |
-0.38 |
0.7131 |
0.05 |
-3.8215 |
2.7274 |
| GLB AGH25_LA Tech_2 |
0.09153 |
1.4398 |
8.699 |
0.06 |
0.9508 |
0.05 |
-3.1829 |
3.3660 |
| GLB AGH25_LA Tech_3 |
-0.6572 |
1.4398 |
8.699 |
-0.46 |
0.6593 |
0.05 |
-3.9316 |
2.6172 |
| GLB AGH25_LA Tech_4 |
1.1127 |
1.4398 |
8.699 |
0.77 |
0.4601 |
0.05 |
-2.1617 |
4.3872 |
| GLB AGH2_Hill Farm_1 |
0.3198 |
1.4398 |
8.699 |
0.22 |
0.8293 |
0.05 |
-2.9546 |
3.5943 |
| GLB AGH2_Hill Farm_2 |
0.3363 |
1.4398 |
8.699 |
0.23 |
0.8207 |
0.05 |
-2.9381 |
3.6108 |
| GLB AGH2_Hill Farm_3 |
0.1483 |
1.4398 |
8.699 |
0.10 |
0.9203 |
0.05 |
-3.1261 |
3.4228 |
| GLB AGH2_Hill Farm_4 |
-0.8045 |
1.4398 |
8.699 |
-0.56 |
0.5904 |
0.05 |
-4.0789 |
2.4699 |
| GLB AGH2_LA Tech_1 |
0.2711 |
1.4398 |
8.699 |
0.19 |
0.8550 |
0.05 |
-3.0033 |
3.5456 |
| GLB AGH2_LA Tech_2 |
-0.1484 |
1.4398 |
8.699 |
-0.10 |
0.9203 |
0.05 |
-3.4228 |
3.1261 |
| GLB AGH2_LA Tech_3 |
0.6397 |
1.4398 |
8.699 |
0.44 |
0.6677 |
0.05 |
-2.6348 |
3.9141 |
| GLB AGH2_LA Tech_4 |
-0.7625 |
1.4398 |
8.699 |
-0.53 |
0.6097 |
0.05 |
-4.0369 |
2.5120 |
| GLB AGHS1_Hill Farm_1 |
0.7940 |
1.4398 |
8.699 |
0.55 |
0.5952 |
0.05 |
-2.4805 |
4.0684 |
| GLB AGHS1_Hill Farm_2 |
-0.4143 |
1.4398 |
8.699 |
-0.29 |
0.7803 |
0.05 |
-3.6888 |
2.8601 |
| GLB AGHS1_Hill Farm_3 |
0.7606 |
1.4398 |
8.699 |
0.53 |
0.6105 |
0.05 |
-2.5138 |
4.0350 |
| GLB AGHS1_Hill Farm_4 |
-1.1402 |
1.4398 |
8.699 |
-0.79 |
0.4495 |
0.05 |
-4.4146 |
2.1342 |
| GLB AGHS1_LA Tech_1 |
-0.6798 |
1.4398 |
8.699 |
-0.47 |
0.6484 |
0.05 |
-3.9543 |
2.5946 |
| GLB AGHS1_LA Tech_2 |
1.3655 |
1.4398 |
8.699 |
0.95 |
0.3686 |
0.05 |
-1.9090 |
4.6399 |
| GLB AGHS1_LA Tech_3 |
-0.1045 |
1.4398 |
8.699 |
-0.07 |
0.9438 |
0.05 |
-3.3790 |
3.1699 |
| GLB AGHS1_LA Tech_4 |
-0.5811 |
1.4398 |
8.699 |
-0.40 |
0.6963 |
0.05 |
-3.8555 |
2.6933 |
| GLB AGHS2_Hill Farm_1 |
-1.2741 |
1.4398 |
8.699 |
-0.88 |
0.4000 |
0.05 |
-4.5485 |
2.0003 |
| GLB AGHS2_Hill Farm_2 |
-1.9036 |
1.4398 |
8.699 |
-1.32 |
0.2199 |
0.05 |
-5.1780 |
1.3709 |
| GLB AGHS2_Hill Farm_3 |
2.0137 |
1.4398 |
8.699 |
1.40 |
0.1966 |
0.05 |
-1.2607 |
5.2881 |
| GLB AGHS2_Hill Farm_4 |
1.1639 |
1.4398 |
8.699 |
0.81 |
0.4404 |
0.05 |
-2.1105 |
4.4384 |
| GLB AGHS2_LA Tech_1 |
-1.1906 |
1.4398 |
8.699 |
-0.83 |
0.4304 |
0.05 |
-4.4650 |
2.0838 |
| GLB AGHS2_LA Tech_2 |
-0.4809 |
1.4398 |
8.699 |
-0.33 |
0.7463 |
0.05 |
-3.7553 |
2.7935 |
| GLB AGHS2_LA Tech_3 |
0.5704 |
1.4398 |
8.699 |
0.40 |
0.7015 |
0.05 |
-2.7040 |
3.8448 |
| GLB AGHS2_LA Tech_4 |
1.1011 |
1.4398 |
8.699 |
0.76 |
0.4647 |
0.05 |
-2.1733 |
4.3755 |
| GLB AGHS3_Hill Farm_1 |
1.5679 |
1.4398 |
8.699 |
1.09 |
0.3054 |
0.05 |
-1.7066 |
4.8423 |
| GLB AGHS3_Hill Farm_2 |
-1.5387 |
1.4398 |
8.699 |
-1.07 |
0.3140 |
0.05 |
-4.8132 |
1.7357 |
| GLB AGHS3_Hill Farm_3 |
0.3698 |
1.4398 |
8.699 |
0.26 |
0.8033 |
0.05 |
-2.9046 |
3.6442 |
| GLB AGHS3_Hill Farm_4 |
-0.3989 |
1.4398 |
8.699 |
-0.28 |
0.7882 |
0.05 |
-3.6734 |
2.8755 |
| GLB AGHS3_LA Tech_1 |
-0.01348 |
1.4398 |
8.699 |
-0.01 |
0.9927 |
0.05 |
-3.2879 |
3.2609 |
| GLB AGHS3_LA Tech_2 |
-0.1444 |
1.4398 |
8.699 |
-0.10 |
0.9224 |
0.05 |
-3.4188 |
3.1301 |
| GLB AGHS3_LA Tech_3 |
-0.3383 |
1.4398 |
8.699 |
-0.23 |
0.8197 |
0.05 |
-3.6127 |
2.9361 |
| GLB AGHS3_LA Tech_4 |
0.4961 |
1.4398 |
8.699 |
0.34 |
0.7386 |
0.05 |
-2.7783 |
3.7706 |
| GLB AGHS4_Hill Farm_1 |
-0.4645 |
1.4398 |
8.699 |
-0.32 |
0.7546 |
0.05 |
-3.7389 |
2.8100 |
| GLB AGHS4_Hill Farm_2 |
1.3958 |
1.4398 |
8.699 |
0.97 |
0.3585 |
0.05 |
-1.8786 |
4.6702 |
| GLB AGHS4_Hill Farm_3 |
-1.1545 |
1.4398 |
8.699 |
-0.80 |
0.4440 |
0.05 |
-4.4289 |
2.1199 |
| GLB AGHS4_Hill Farm_4 |
0.2232 |
1.4398 |
8.699 |
0.16 |
0.8804 |
0.05 |
-3.0512 |
3.4976 |
| GLB AGHS4_LA Tech_1 |
-0.5897 |
1.4398 |
8.699 |
-0.41 |
0.6920 |
0.05 |
-3.8641 |
2.6847 |
| GLB AGHS4_LA Tech_2 |
0.08132 |
1.4398 |
8.699 |
0.06 |
0.9562 |
0.05 |
-3.1931 |
3.3558 |
| GLB AGHS4_LA Tech_3 |
0.1598 |
1.4398 |
8.699 |
0.11 |
0.9142 |
0.05 |
-3.1147 |
3.4342 |
| GLB AGHS4_LA Tech_4 |
0.3486 |
1.4398 |
8.699 |
0.24 |
0.8143 |
0.05 |
-2.9258 |
3.6230 |
Slices
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
2.1942 |
1.0919 |
101.8 |
2.01 |
0.0471 |
0.0482 |
Year*Location Lines
| Hill Farm |
14.2584 |
A |
| Â |
 |
 |
| LA Tech |
12.0642 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
0.6313 |
1.0919 |
101.8 |
0.58 |
0.5645 |
0.5650 |
Year*Location Lines
| Hill Farm |
5.3606 |
A |
| Â |
 |
A |
| LA Tech |
4.7294 |
A |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-7.8569 |
1.0919 |
101.8 |
-7.20 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
45.2951 |
A |
| Â |
 |
 |
| Hill Farm |
37.4382 |
B |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.6944 |
1.8913 |
101.8 |
-0.37 |
0.7143 |
0.9991 |
| AGH2 |
AGHS1 |
-2.7749 |
1.8913 |
101.8 |
-1.47 |
0.1454 |
0.6859 |
| AGH2 |
AGHS2 |
-2.9718 |
1.8913 |
101.8 |
-1.57 |
0.1192 |
0.6198 |
| AGH2 |
AGHS3 |
-1.9752 |
1.8913 |
101.8 |
-1.04 |
0.2988 |
0.9012 |
| AGH2 |
AGHS4 |
-2.1454 |
1.8913 |
101.8 |
-1.13 |
0.2593 |
0.8654 |
| AGH25 |
AGHS1 |
-2.0806 |
1.8913 |
101.8 |
-1.10 |
0.2739 |
0.8798 |
| AGH25 |
AGHS2 |
-2.2774 |
1.8913 |
101.8 |
-1.20 |
0.2313 |
0.8334 |
| AGH25 |
AGHS3 |
-1.2808 |
1.8913 |
101.8 |
-0.68 |
0.4998 |
0.9839 |
| AGH25 |
AGHS4 |
-1.4510 |
1.8913 |
101.8 |
-0.77 |
0.4447 |
0.9721 |
| AGHS1 |
AGHS2 |
-0.1969 |
1.8913 |
101.8 |
-0.10 |
0.9173 |
1.0000 |
| AGHS1 |
AGHS3 |
0.7998 |
1.8913 |
101.8 |
0.42 |
0.6733 |
0.9982 |
| AGHS1 |
AGHS4 |
0.6296 |
1.8913 |
101.8 |
0.33 |
0.7399 |
0.9994 |
| AGHS2 |
AGHS3 |
0.9966 |
1.8913 |
101.8 |
0.53 |
0.5994 |
0.9949 |
| AGHS2 |
AGHS4 |
0.8264 |
1.8913 |
101.8 |
0.44 |
0.6631 |
0.9979 |
| AGHS3 |
AGHS4 |
-0.1702 |
1.8913 |
101.8 |
-0.09 |
0.9285 |
1.0000 |
Year*Family Lines
| AGHS2 |
14.3728 |
A |
| Â |
 |
A |
| AGHS1 |
14.1760 |
A |
| Â |
 |
A |
| AGHS4 |
13.5464 |
A |
| Â |
 |
A |
| AGHS3 |
13.3762 |
A |
| Â |
 |
A |
| AGH25 |
12.0954 |
A |
| Â |
 |
A |
| AGH2 |
11.4010 |
A |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
0.1218 |
1.8913 |
101.8 |
0.06 |
0.9488 |
1.0000 |
| AGH2 |
AGHS1 |
-0.00609 |
1.8913 |
101.8 |
-0.00 |
0.9974 |
1.0000 |
| AGH2 |
AGHS2 |
0.4117 |
1.8913 |
101.8 |
0.22 |
0.8281 |
0.9999 |
| AGH2 |
AGHS3 |
0.006111 |
1.8913 |
101.8 |
0.00 |
0.9974 |
1.0000 |
| AGH2 |
AGHS4 |
-0.1435 |
1.8913 |
101.8 |
-0.08 |
0.9397 |
1.0000 |
| AGH25 |
AGHS1 |
-0.1279 |
1.8913 |
101.8 |
-0.07 |
0.9462 |
1.0000 |
| AGH25 |
AGHS2 |
0.2899 |
1.8913 |
101.8 |
0.15 |
0.8785 |
1.0000 |
| AGH25 |
AGHS3 |
-0.1157 |
1.8913 |
101.8 |
-0.06 |
0.9513 |
1.0000 |
| AGH25 |
AGHS4 |
-0.2653 |
1.8913 |
101.8 |
-0.14 |
0.8887 |
1.0000 |
| AGHS1 |
AGHS2 |
0.4178 |
1.8913 |
101.8 |
0.22 |
0.8256 |
0.9999 |
| AGHS1 |
AGHS3 |
0.01220 |
1.8913 |
101.8 |
0.01 |
0.9949 |
1.0000 |
| AGHS1 |
AGHS4 |
-0.1374 |
1.8913 |
101.8 |
-0.07 |
0.9422 |
1.0000 |
| AGHS2 |
AGHS3 |
-0.4056 |
1.8913 |
101.8 |
-0.21 |
0.8306 |
0.9999 |
| AGHS2 |
AGHS4 |
-0.5552 |
1.8913 |
101.8 |
-0.29 |
0.7697 |
0.9997 |
| AGHS3 |
AGHS4 |
-0.1496 |
1.8913 |
101.8 |
-0.08 |
0.9371 |
1.0000 |
Year*Family Lines
| AGHS4 |
5.2535 |
A |
| Â |
 |
A |
| AGHS1 |
5.1161 |
A |
| Â |
 |
A |
| AGH2 |
5.1100 |
A |
| Â |
 |
A |
| AGHS3 |
5.1039 |
A |
| Â |
 |
A |
| AGH25 |
4.9882 |
A |
| Â |
 |
A |
| AGHS2 |
4.6983 |
A |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-3.1702 |
1.8913 |
101.8 |
-1.68 |
0.0968 |
0.5517 |
| AGH2 |
AGHS1 |
-9.7229 |
1.8913 |
101.8 |
-5.14 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-10.2074 |
1.8913 |
101.8 |
-5.40 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-6.8012 |
1.8913 |
101.8 |
-3.60 |
0.0005 |
0.0075 |
| AGH2 |
AGHS4 |
-9.0848 |
1.8913 |
101.8 |
-4.80 |
<.0001 |
0.0001 |
| AGH25 |
AGHS1 |
-6.5527 |
1.8913 |
101.8 |
-3.46 |
0.0008 |
0.0112 |
| AGH25 |
AGHS2 |
-7.0372 |
1.8913 |
101.8 |
-3.72 |
0.0003 |
0.0051 |
| AGH25 |
AGHS3 |
-3.6310 |
1.8913 |
101.8 |
-1.92 |
0.0577 |
0.3987 |
| AGH25 |
AGHS4 |
-5.9146 |
1.8913 |
101.8 |
-3.13 |
0.0023 |
0.0294 |
| AGHS1 |
AGHS2 |
-0.4845 |
1.8913 |
101.8 |
-0.26 |
0.7983 |
0.9998 |
| AGHS1 |
AGHS3 |
2.9217 |
1.8913 |
101.8 |
1.54 |
0.1255 |
0.6368 |
| AGHS1 |
AGHS4 |
0.6381 |
1.8913 |
101.8 |
0.34 |
0.7365 |
0.9994 |
| AGHS2 |
AGHS3 |
3.4062 |
1.8913 |
101.8 |
1.80 |
0.0747 |
0.4716 |
| AGHS2 |
AGHS4 |
1.1226 |
1.8913 |
101.8 |
0.59 |
0.5541 |
0.9912 |
| AGHS3 |
AGHS4 |
-2.2836 |
1.8913 |
101.8 |
-1.21 |
0.2301 |
0.8319 |
Year*Family Lines
| AGHS2 |
45.0763 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
44.5918 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
43.9537 |
 |
A |
| Â |
 |
 |
A |
| AGHS3 |
41.6701 |
B |
A |
| Â |
 |
B |
 |
| AGH25 |
38.0391 |
B |
C |
| Â |
 |
 |
C |
| AGH2 |
34.8689 |
 |
C |
LS-Means Results
Family LS-Means
| AGH2 |
17.1266 |
0.8970 |
36 |
19.09 |
<.0001 |
| AGH25 |
18.3742 |
0.8970 |
36 |
20.48 |
<.0001 |
| AGHS1 |
21.2946 |
0.8970 |
36 |
23.74 |
<.0001 |
| AGHS2 |
21.3825 |
0.8970 |
36 |
23.84 |
<.0001 |
| AGHS3 |
20.0501 |
0.8970 |
36 |
22.35 |
<.0001 |
| AGHS4 |
20.9179 |
0.8970 |
36 |
23.32 |
<.0001 |
Family Diffs
| AGH2 |
AGH25 |
-1.2476 |
1.2686 |
36 |
-0.98 |
0.3319 |
0.9202 |
| AGH2 |
AGHS1 |
-4.1680 |
1.2686 |
36 |
-3.29 |
0.0023 |
0.0255 |
| AGH2 |
AGHS2 |
-4.2558 |
1.2686 |
36 |
-3.35 |
0.0019 |
0.0214 |
| AGH2 |
AGHS3 |
-2.9234 |
1.2686 |
36 |
-2.30 |
0.0271 |
0.2187 |
| AGH2 |
AGHS4 |
-3.7912 |
1.2686 |
36 |
-2.99 |
0.0050 |
0.0524 |
| AGH25 |
AGHS1 |
-2.9204 |
1.2686 |
36 |
-2.30 |
0.0272 |
0.2196 |
| AGH25 |
AGHS2 |
-3.0082 |
1.2686 |
36 |
-2.37 |
0.0232 |
0.1934 |
| AGH25 |
AGHS3 |
-1.6758 |
1.2686 |
36 |
-1.32 |
0.1948 |
0.7716 |
| AGH25 |
AGHS4 |
-2.5436 |
1.2686 |
36 |
-2.01 |
0.0525 |
0.3594 |
| AGHS1 |
AGHS2 |
-0.08785 |
1.2686 |
36 |
-0.07 |
0.9452 |
1.0000 |
| AGHS1 |
AGHS3 |
1.2445 |
1.2686 |
36 |
0.98 |
0.3331 |
0.9210 |
| AGHS1 |
AGHS4 |
0.3768 |
1.2686 |
36 |
0.30 |
0.7682 |
0.9997 |
| AGHS2 |
AGHS3 |
1.3324 |
1.2686 |
36 |
1.05 |
0.3006 |
0.8974 |
| AGHS2 |
AGHS4 |
0.4646 |
1.2686 |
36 |
0.37 |
0.7163 |
0.9991 |
| AGHS3 |
AGHS4 |
-0.8678 |
1.2686 |
36 |
-0.68 |
0.4983 |
0.9826 |
Family Lines
| AGHS2 |
21.3825 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
21.2946 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
20.9179 |
B |
A |
| Â |
 |
B |
A |
| AGHS3 |
20.0501 |
B |
A |
| Â |
 |
B |
A |
| AGH25 |
18.3742 |
B |
A |
| Â |
 |
B |
 |
| AGH2 |
17.1266 |
B |
 |
SAS Output DBH
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Results: hane.sas
Results: hane.sas
The Glimmix Procedure
Model Information
| WORK.DBH |
| DBH |
| Gaussian |
| Identity |
| Default |
| GLB |
| Restricted Maximum Likelihood |
| Kenward-Roger |
| Kenward-Roger |
Class Level Information
| 5 |
Fifth Fourth Seventh Sixth Third |
| 2 |
Hill Farm LA Tech |
| 4 |
1 2 3 4 |
| 6 |
AGH2 AGH25 AGHS1 AGHS2 AGHS3 AGHS4 |
| 48 |
AGH25_Hill Farm_1 AGH25_Hill Farm_2 AGH25_Hill Farm_3 AGH25_Hill Farm_4 AGH25_LA Tech_1 AGH25_LA Tech_2 AGH25_LA Tech_3 AGH25_LA Tech_4 AGH2_Hill Farm_1 AGH2_Hill Farm_2 AGH2_Hill Farm_3 AGH2_Hill Farm_4 AGH2_LA Tech_1 AGH2_LA Tech_2 AGH2_LA Tech_3 AGH2_LA Tech_4 AGHS1_Hill Farm_1 AGHS1_Hill Farm_2 AGHS1_Hill Farm_3 AGHS1_Hill Farm_4 AGHS1_LA Tech_1 AGHS1_LA Tech_2 AGHS1_LA Tech_3 AGHS1_LA Tech_4 AGHS2_Hill Farm_1 AGHS2_Hill Farm_2 AGHS2_Hill Farm_3 AGHS2_Hill Farm_4 AGHS2_LA Tech_1 AGHS2_LA Tech_2 AGHS2_LA Tech_3 AGHS2_LA Tech_4 AGHS3_Hill Farm_1 AGHS3_Hill Farm_2 AGHS3_Hill Farm_3 AGHS3_Hill Farm_4 AGHS3_LA Tech_1 AGHS3_LA Tech_2 AGHS3_LA Tech_3 AGHS3_LA Tech_4 AGHS4_Hill Farm_1 AGHS4_Hill Farm_2 AGHS4_Hill Farm_3 AGHS4_Hill Farm_4 AGHS4_LA Tech_1 AGHS4_LA Tech_2 AGHS4_LA Tech_3 AGHS4_LA Tech_4 |
Number of Observations
Dimensions
Optimization Information
| Dual Quasi-Newton |
| 2 |
| 2 |
| 1 |
| Profiled |
| Profiled |
| Data |
Iteration History
| 4 |
337.79560627 |
. |
5.28E-13 |
Convergence Status
| Convergence criterion (ABSGCONV=0.00001) satisfied. |
Hessian Matrix
| Variance |
GLB |
7.5640 |
 |
| AR(1) |
GLB |
 |
 |
Fit Statistics
| 337.80 |
| 343.80 |
| 343.93 |
| 349.41 |
| 352.41 |
| 345.92 |
| 27.50 |
| 0.15 |
Covariance Parameter Estimates
| GLB |
0.2675 |
0.07035 |
| GLB |
0 |
. |
| Â |
0.1528 |
0.01800 |
Solutions for Fixed Effects
| Â |
 |
 |
3.8518 |
0.3241 |
68.68 |
11.88 |
<.0001 |
| Fifth |
 |
 |
6.8444 |
0.2764 |
144 |
24.77 |
<.0001 |
| Fourth |
 |
 |
3.7379 |
0.2764 |
144 |
13.53 |
<.0001 |
| Seventh |
 |
 |
9.9398 |
0.2764 |
144 |
35.97 |
<.0001 |
| Sixth |
 |
 |
8.7141 |
0.2764 |
144 |
31.53 |
<.0001 |
| Third |
 |
 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
 |
-0.9135 |
0.4584 |
68.68 |
-1.99 |
0.0502 |
| Â |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
 |
-1.2948 |
0.3908 |
144 |
-3.31 |
0.0012 |
| Fifth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Fourth |
Hill Farm |
 |
-0.5688 |
0.3908 |
144 |
-1.46 |
0.1477 |
| Fourth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
 |
-0.6350 |
0.3908 |
144 |
-1.62 |
0.1064 |
| Seventh |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
 |
-0.4200 |
0.3908 |
144 |
-1.07 |
0.2844 |
| Sixth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Â |
 |
AGH2 |
-2.1578 |
0.4584 |
68.68 |
-4.71 |
<.0001 |
| Â |
 |
AGH25 |
-1.9694 |
0.4584 |
68.68 |
-4.30 |
<.0001 |
| Â |
 |
AGHS1 |
-0.3172 |
0.4584 |
68.68 |
-0.69 |
0.4913 |
| Â |
 |
AGHS2 |
0.1063 |
0.4584 |
68.68 |
0.23 |
0.8173 |
| Â |
 |
AGHS3 |
-1.2254 |
0.4584 |
68.68 |
-2.67 |
0.0094 |
| Â |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
 |
AGH2 |
-0.5357 |
0.3908 |
144 |
-1.37 |
0.1726 |
| Fifth |
 |
AGH25 |
-0.2856 |
0.3908 |
144 |
-0.73 |
0.4661 |
| Fifth |
 |
AGHS1 |
-1.4184 |
0.3908 |
144 |
-3.63 |
0.0004 |
| Fifth |
 |
AGHS2 |
-1.6092 |
0.3908 |
144 |
-4.12 |
<.0001 |
| Fifth |
 |
AGHS3 |
-0.1346 |
0.3908 |
144 |
-0.34 |
0.7311 |
| Fifth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
 |
AGH2 |
-0.3221 |
0.3908 |
144 |
-0.82 |
0.4112 |
| Fourth |
 |
AGH25 |
-0.01489 |
0.3908 |
144 |
-0.04 |
0.9697 |
| Fourth |
 |
AGHS1 |
-0.6544 |
0.3908 |
144 |
-1.67 |
0.0962 |
| Fourth |
 |
AGHS2 |
-0.7991 |
0.3908 |
144 |
-2.04 |
0.0427 |
| Fourth |
 |
AGHS3 |
0.06217 |
0.3908 |
144 |
0.16 |
0.8738 |
| Fourth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
 |
AGH2 |
-0.04498 |
0.3908 |
144 |
-0.12 |
0.9085 |
| Seventh |
 |
AGH25 |
-0.2542 |
0.3908 |
144 |
-0.65 |
0.5165 |
| Seventh |
 |
AGHS1 |
-1.5222 |
0.3908 |
144 |
-3.89 |
0.0002 |
| Seventh |
 |
AGHS2 |
-1.6619 |
0.3908 |
144 |
-4.25 |
<.0001 |
| Seventh |
 |
AGHS3 |
-0.1730 |
0.3908 |
144 |
-0.44 |
0.6586 |
| Seventh |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGH2 |
-0.4924 |
0.3908 |
144 |
-1.26 |
0.2097 |
| Sixth |
 |
AGH25 |
-0.2868 |
0.3908 |
144 |
-0.73 |
0.4643 |
| Sixth |
 |
AGHS1 |
-1.2209 |
0.3908 |
144 |
-3.12 |
0.0022 |
| Sixth |
 |
AGHS2 |
-1.6868 |
0.3908 |
144 |
-4.32 |
<.0001 |
| Sixth |
 |
AGHS3 |
0.09563 |
0.3908 |
144 |
0.24 |
0.8070 |
| Sixth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
 |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
 |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
AGH2 |
0.7712 |
0.6483 |
68.68 |
1.19 |
0.2383 |
| Â |
Hill Farm |
AGH25 |
0.5841 |
0.6483 |
68.68 |
0.90 |
0.3708 |
| Â |
Hill Farm |
AGHS1 |
0.2693 |
0.6483 |
68.68 |
0.42 |
0.6792 |
| Â |
Hill Farm |
AGHS2 |
-0.4456 |
0.6483 |
68.68 |
-0.69 |
0.4941 |
| Â |
Hill Farm |
AGHS3 |
0.2826 |
0.6483 |
68.68 |
0.44 |
0.6642 |
| Â |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
AGH2 |
-0.4343 |
0.5527 |
144 |
-0.79 |
0.4333 |
| Fifth |
Hill Farm |
AGH25 |
-0.2834 |
0.5527 |
144 |
-0.51 |
0.6089 |
| Fifth |
Hill Farm |
AGHS1 |
0.06586 |
0.5527 |
144 |
0.12 |
0.9053 |
| Fifth |
Hill Farm |
AGHS2 |
0.7027 |
0.5527 |
144 |
1.27 |
0.2057 |
| Fifth |
Hill Farm |
AGHS3 |
-0.1706 |
0.5527 |
144 |
-0.31 |
0.7580 |
| Fifth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
Hill Farm |
AGH2 |
-0.9294 |
0.5527 |
144 |
-1.68 |
0.0948 |
| Fourth |
Hill Farm |
AGH25 |
-1.0055 |
0.5527 |
144 |
-1.82 |
0.0710 |
| Fourth |
Hill Farm |
AGHS1 |
-0.2051 |
0.5527 |
144 |
-0.37 |
0.7112 |
| Fourth |
Hill Farm |
AGHS2 |
-0.04451 |
0.5527 |
144 |
-0.08 |
0.9359 |
| Fourth |
Hill Farm |
AGHS3 |
-0.7046 |
0.5527 |
144 |
-1.27 |
0.2044 |
| Fourth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
AGH2 |
-0.8942 |
0.5527 |
144 |
-1.62 |
0.1079 |
| Seventh |
Hill Farm |
AGH25 |
-0.6181 |
0.5527 |
144 |
-1.12 |
0.2653 |
| Seventh |
Hill Farm |
AGHS1 |
-0.3015 |
0.5527 |
144 |
-0.55 |
0.5862 |
| Seventh |
Hill Farm |
AGHS2 |
0.4281 |
0.5527 |
144 |
0.77 |
0.4398 |
| Seventh |
Hill Farm |
AGHS3 |
-0.8381 |
0.5527 |
144 |
-1.52 |
0.1316 |
| Seventh |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGH2 |
-0.6702 |
0.5527 |
144 |
-1.21 |
0.2273 |
| Sixth |
Hill Farm |
AGH25 |
-0.7039 |
0.5527 |
144 |
-1.27 |
0.2049 |
| Sixth |
Hill Farm |
AGHS1 |
-0.5868 |
0.5527 |
144 |
-1.06 |
0.2902 |
| Sixth |
Hill Farm |
AGHS2 |
0.3045 |
0.5527 |
144 |
0.55 |
0.5825 |
| Sixth |
Hill Farm |
AGHS3 |
-0.5005 |
0.5527 |
144 |
-0.91 |
0.3667 |
| Sixth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
Type III Tests of Fixed Effects
| 4 |
144 |
4058.38 |
<.0001 |
| 1 |
36 |
90.58 |
<.0001 |
| 4 |
144 |
19.76 |
<.0001 |
| 5 |
36 |
18.48 |
<.0001 |
| 20 |
144 |
4.79 |
<.0001 |
| 5 |
36 |
0.13 |
0.9849 |
| 20 |
144 |
0.77 |
0.7482 |
Solution for Random Effects
| GLB AGH25_Hill Farm_1 |
0.2413 |
0.2963 |
46.37 |
0.81 |
0.4195 |
0.05 |
-0.3549 |
0.8375 |
| GLB AGH25_Hill Farm_2 |
-0.2756 |
0.2963 |
46.37 |
-0.93 |
0.3570 |
0.05 |
-0.8718 |
0.3206 |
| GLB AGH25_Hill Farm_3 |
-0.01982 |
0.2963 |
46.37 |
-0.07 |
0.9470 |
0.05 |
-0.6160 |
0.5764 |
| GLB AGH25_Hill Farm_4 |
0.05412 |
0.2963 |
46.37 |
0.18 |
0.8558 |
0.05 |
-0.5421 |
0.6503 |
| GLB AGH25_LA Tech_1 |
-0.4092 |
0.2963 |
46.37 |
-1.38 |
0.1738 |
0.05 |
-1.0054 |
0.1870 |
| GLB AGH25_LA Tech_2 |
-0.3500 |
0.2963 |
46.37 |
-1.18 |
0.2434 |
0.05 |
-0.9463 |
0.2462 |
| GLB AGH25_LA Tech_3 |
0.3857 |
0.2963 |
46.37 |
1.30 |
0.1994 |
0.05 |
-0.2105 |
0.9819 |
| GLB AGH25_LA Tech_4 |
0.3735 |
0.2963 |
46.37 |
1.26 |
0.2137 |
0.05 |
-0.2227 |
0.9698 |
| GLB AGH2_Hill Farm_1 |
-0.2716 |
0.2963 |
46.37 |
-0.92 |
0.3640 |
0.05 |
-0.8678 |
0.3246 |
| GLB AGH2_Hill Farm_2 |
0.1398 |
0.2963 |
46.37 |
0.47 |
0.6392 |
0.05 |
-0.4564 |
0.7360 |
| GLB AGH2_Hill Farm_3 |
0.3201 |
0.2963 |
46.37 |
1.08 |
0.2855 |
0.05 |
-0.2761 |
0.9164 |
| GLB AGH2_Hill Farm_4 |
-0.1884 |
0.2963 |
46.37 |
-0.64 |
0.5280 |
0.05 |
-0.7846 |
0.4079 |
| GLB AGH2_LA Tech_1 |
-0.05234 |
0.2963 |
46.37 |
-0.18 |
0.8606 |
0.05 |
-0.6485 |
0.5439 |
| GLB AGH2_LA Tech_2 |
-0.6627 |
0.2963 |
46.37 |
-2.24 |
0.0301 |
0.05 |
-1.2590 |
-0.06653 |
| GLB AGH2_LA Tech_3 |
0.8727 |
0.2963 |
46.37 |
2.95 |
0.0050 |
0.05 |
0.2764 |
1.4689 |
| GLB AGH2_LA Tech_4 |
-0.1576 |
0.2963 |
46.37 |
-0.53 |
0.5973 |
0.05 |
-0.7538 |
0.4386 |
| GLB AGHS1_Hill Farm_1 |
0.1936 |
0.2963 |
46.37 |
0.65 |
0.5166 |
0.05 |
-0.4026 |
0.7898 |
| GLB AGHS1_Hill Farm_2 |
-0.1444 |
0.2963 |
46.37 |
-0.49 |
0.6283 |
0.05 |
-0.7406 |
0.4518 |
| GLB AGHS1_Hill Farm_3 |
0.4937 |
0.2963 |
46.37 |
1.67 |
0.1024 |
0.05 |
-0.1025 |
1.0899 |
| GLB AGHS1_Hill Farm_4 |
-0.5429 |
0.2963 |
46.37 |
-1.83 |
0.0733 |
0.05 |
-1.1391 |
0.05331 |
| GLB AGHS1_LA Tech_1 |
-0.4634 |
0.2963 |
46.37 |
-1.56 |
0.1246 |
0.05 |
-1.0596 |
0.1328 |
| GLB AGHS1_LA Tech_2 |
0.4700 |
0.2963 |
46.37 |
1.59 |
0.1195 |
0.05 |
-0.1262 |
1.0662 |
| GLB AGHS1_LA Tech_3 |
0.4483 |
0.2963 |
46.37 |
1.51 |
0.1370 |
0.05 |
-0.1479 |
1.0445 |
| GLB AGHS1_LA Tech_4 |
-0.4549 |
0.2963 |
46.37 |
-1.54 |
0.1315 |
0.05 |
-1.0511 |
0.1413 |
| GLB AGHS2_Hill Farm_1 |
-0.00318 |
0.2963 |
46.37 |
-0.01 |
0.9915 |
0.05 |
-0.5994 |
0.5930 |
| GLB AGHS2_Hill Farm_2 |
-0.8445 |
0.2963 |
46.37 |
-2.85 |
0.0065 |
0.05 |
-1.4407 |
-0.2483 |
| GLB AGHS2_Hill Farm_3 |
0.3695 |
0.2963 |
46.37 |
1.25 |
0.2185 |
0.05 |
-0.2267 |
0.9657 |
| GLB AGHS2_Hill Farm_4 |
0.4782 |
0.2963 |
46.37 |
1.61 |
0.1133 |
0.05 |
-0.1180 |
1.0744 |
| GLB AGHS2_LA Tech_1 |
-0.5213 |
0.2963 |
46.37 |
-1.76 |
0.0851 |
0.05 |
-1.1175 |
0.07492 |
| GLB AGHS2_LA Tech_2 |
0.05283 |
0.2963 |
46.37 |
0.18 |
0.8592 |
0.05 |
-0.5434 |
0.6490 |
| GLB AGHS2_LA Tech_3 |
0.5827 |
0.2963 |
46.37 |
1.97 |
0.0552 |
0.05 |
-0.01349 |
1.1789 |
| GLB AGHS2_LA Tech_4 |
-0.1143 |
0.2963 |
46.37 |
-0.39 |
0.7015 |
0.05 |
-0.7105 |
0.4820 |
| GLB AGHS3_Hill Farm_1 |
0.8690 |
0.2963 |
46.37 |
2.93 |
0.0052 |
0.05 |
0.2727 |
1.4652 |
| GLB AGHS3_Hill Farm_2 |
-1.1000 |
0.2963 |
46.37 |
-3.71 |
0.0005 |
0.05 |
-1.6962 |
-0.5038 |
| GLB AGHS3_Hill Farm_3 |
0.5274 |
0.2963 |
46.37 |
1.78 |
0.0816 |
0.05 |
-0.06881 |
1.1236 |
| GLB AGHS3_Hill Farm_4 |
-0.2963 |
0.2963 |
46.37 |
-1.00 |
0.3224 |
0.05 |
-0.8926 |
0.2999 |
| GLB AGHS3_LA Tech_1 |
-0.2220 |
0.2963 |
46.37 |
-0.75 |
0.4574 |
0.05 |
-0.8182 |
0.3742 |
| GLB AGHS3_LA Tech_2 |
-0.06415 |
0.2963 |
46.37 |
-0.22 |
0.8295 |
0.05 |
-0.6604 |
0.5321 |
| GLB AGHS3_LA Tech_3 |
0.4623 |
0.2963 |
46.37 |
1.56 |
0.1254 |
0.05 |
-0.1339 |
1.0585 |
| GLB AGHS3_LA Tech_4 |
-0.1761 |
0.2963 |
46.37 |
-0.59 |
0.5550 |
0.05 |
-0.7724 |
0.4201 |
| GLB AGHS4_Hill Farm_1 |
0.002375 |
0.2963 |
46.37 |
0.01 |
0.9936 |
0.05 |
-0.5938 |
0.5986 |
| GLB AGHS4_Hill Farm_2 |
0.5383 |
0.2963 |
46.37 |
1.82 |
0.0757 |
0.05 |
-0.05786 |
1.1346 |
| GLB AGHS4_Hill Farm_3 |
-0.2894 |
0.2963 |
46.37 |
-0.98 |
0.3337 |
0.05 |
-0.8856 |
0.3068 |
| GLB AGHS4_Hill Farm_4 |
-0.2513 |
0.2963 |
46.37 |
-0.85 |
0.4006 |
0.05 |
-0.8475 |
0.3449 |
| GLB AGHS4_LA Tech_1 |
-0.2461 |
0.2963 |
46.37 |
-0.83 |
0.4104 |
0.05 |
-0.8423 |
0.3501 |
| GLB AGHS4_LA Tech_2 |
-0.2476 |
0.2963 |
46.37 |
-0.84 |
0.4076 |
0.05 |
-0.8438 |
0.3486 |
| GLB AGHS4_LA Tech_3 |
0.1678 |
0.2963 |
46.37 |
0.57 |
0.5738 |
0.05 |
-0.4284 |
0.7641 |
| GLB AGHS4_LA Tech_4 |
0.3258 |
0.2963 |
46.37 |
1.10 |
0.2771 |
0.05 |
-0.2704 |
0.9221 |
Slices
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.9848 |
0.1871 |
68.68 |
-10.61 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
9.1051 |
A |
| Â |
 |
 |
| Hill Farm |
7.1203 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.7203 |
0.1871 |
68.68 |
-9.19 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
6.3744 |
A |
| Â |
 |
 |
| Hill Farm |
4.6541 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.6756 |
0.1871 |
68.68 |
-8.95 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
12.2550 |
A |
| Â |
 |
 |
| Hill Farm |
10.5794 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.4494 |
0.1871 |
68.68 |
-7.74 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
11.0402 |
A |
| Â |
 |
 |
| Hill Farm |
9.5908 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-0.6700 |
0.1871 |
68.68 |
-3.58 |
0.0006 |
0.0005 |
Year*Location Lines
| LA Tech |
2.9246 |
A |
| Â |
 |
 |
| Hill Farm |
2.2546 |
B |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.4203 |
0.3241 |
68.68 |
-1.30 |
0.1991 |
0.7865 |
| AGH2 |
AGHS1 |
-0.9569 |
0.3241 |
68.68 |
-2.95 |
0.0043 |
0.0420 |
| AGH2 |
AGHS2 |
-1.1507 |
0.3241 |
68.68 |
-3.55 |
0.0007 |
0.0068 |
| AGH2 |
AGHS3 |
-1.2211 |
0.3241 |
68.68 |
-3.77 |
0.0003 |
0.0032 |
| AGH2 |
AGHS4 |
-2.5250 |
0.3241 |
68.68 |
-7.79 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.5366 |
0.3241 |
68.68 |
-1.66 |
0.1024 |
0.5634 |
| AGH25 |
AGHS2 |
-0.7304 |
0.3241 |
68.68 |
-2.25 |
0.0274 |
0.2204 |
| AGH25 |
AGHS3 |
-0.8007 |
0.3241 |
68.68 |
-2.47 |
0.0160 |
0.1400 |
| AGH25 |
AGHS4 |
-2.1047 |
0.3241 |
68.68 |
-6.49 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.1938 |
0.3241 |
68.68 |
-0.60 |
0.5519 |
0.9910 |
| AGHS1 |
AGHS3 |
-0.2641 |
0.3241 |
68.68 |
-0.81 |
0.4179 |
0.9644 |
| AGHS1 |
AGHS4 |
-1.5681 |
0.3241 |
68.68 |
-4.84 |
<.0001 |
<.0001 |
| AGHS2 |
AGHS3 |
-0.07037 |
0.3241 |
68.68 |
-0.22 |
0.8288 |
0.9999 |
| AGHS2 |
AGHS4 |
-1.3743 |
0.3241 |
68.68 |
-4.24 |
<.0001 |
0.0006 |
| AGHS3 |
AGHS4 |
-1.3040 |
0.3241 |
68.68 |
-4.02 |
0.0001 |
0.0013 |
Year*Family Lines
| AGHS4 |
9.5920 |
 |
A |
| Â |
 |
 |
 |
| AGHS3 |
8.2881 |
 |
B |
| Â |
 |
 |
B |
| AGHS2 |
8.2177 |
 |
B |
| Â |
 |
 |
B |
| AGHS1 |
8.0239 |
 |
B |
| Â |
 |
 |
B |
| AGH25 |
7.4873 |
C |
B |
| Â |
 |
C |
 |
| AGH2 |
7.0670 |
C |
 |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.3639 |
0.3241 |
68.68 |
-1.12 |
0.2654 |
0.8712 |
| AGH2 |
AGHS1 |
-1.6194 |
0.3241 |
68.68 |
-5.00 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.6211 |
0.3241 |
68.68 |
-5.00 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-1.1847 |
0.3241 |
68.68 |
-3.65 |
0.0005 |
0.0048 |
| AGH2 |
AGHS4 |
-2.5590 |
0.3241 |
68.68 |
-7.89 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-1.2555 |
0.3241 |
68.68 |
-3.87 |
0.0002 |
0.0022 |
| AGH25 |
AGHS2 |
-1.2572 |
0.3241 |
68.68 |
-3.88 |
0.0002 |
0.0022 |
| AGH25 |
AGHS3 |
-0.8208 |
0.3241 |
68.68 |
-2.53 |
0.0136 |
0.1217 |
| AGH25 |
AGHS4 |
-2.1950 |
0.3241 |
68.68 |
-6.77 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.00171 |
0.3241 |
68.68 |
-0.01 |
0.9958 |
1.0000 |
| AGHS1 |
AGHS3 |
0.4347 |
0.3241 |
68.68 |
1.34 |
0.1843 |
0.7617 |
| AGHS1 |
AGHS4 |
-0.9396 |
0.3241 |
68.68 |
-2.90 |
0.0050 |
0.0487 |
| AGHS2 |
AGHS3 |
0.4364 |
0.3241 |
68.68 |
1.35 |
0.1826 |
0.7586 |
| AGHS2 |
AGHS4 |
-0.9379 |
0.3241 |
68.68 |
-2.89 |
0.0051 |
0.0493 |
| AGHS3 |
AGHS4 |
-1.3742 |
0.3241 |
68.68 |
-4.24 |
<.0001 |
0.0006 |
Year*Family Lines
| AGHS4 |
6.8485 |
 |
A |
| Â |
 |
 |
 |
| AGHS2 |
5.9107 |
 |
B |
| Â |
 |
 |
B |
| AGHS1 |
5.9090 |
 |
B |
| Â |
 |
 |
B |
| AGHS3 |
5.4743 |
C |
B |
| Â |
 |
C |
 |
| AGH25 |
4.6535 |
C |
D |
| Â |
 |
 |
D |
| AGH2 |
4.2896 |
 |
D |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.02369 |
0.3241 |
68.68 |
-0.07 |
0.9420 |
1.0000 |
| AGH2 |
AGHS1 |
-0.4087 |
0.3241 |
68.68 |
-1.26 |
0.2116 |
0.8056 |
| AGH2 |
AGHS2 |
-0.7000 |
0.3241 |
68.68 |
-2.16 |
0.0343 |
0.2634 |
| AGH2 |
AGHS3 |
-0.5881 |
0.3241 |
68.68 |
-1.81 |
0.0740 |
0.4599 |
| AGH2 |
AGHS4 |
-2.2643 |
0.3241 |
68.68 |
-6.99 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.3850 |
0.3241 |
68.68 |
-1.19 |
0.2390 |
0.8420 |
| AGH25 |
AGHS2 |
-0.6763 |
0.3241 |
68.68 |
-2.09 |
0.0407 |
0.3003 |
| AGH25 |
AGHS3 |
-0.5644 |
0.3241 |
68.68 |
-1.74 |
0.0861 |
0.5070 |
| AGH25 |
AGHS4 |
-2.2406 |
0.3241 |
68.68 |
-6.91 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.2912 |
0.3241 |
68.68 |
-0.90 |
0.3721 |
0.9463 |
| AGHS1 |
AGHS3 |
-0.1794 |
0.3241 |
68.68 |
-0.55 |
0.5818 |
0.9937 |
| AGHS1 |
AGHS4 |
-1.8555 |
0.3241 |
68.68 |
-5.72 |
<.0001 |
<.0001 |
| AGHS2 |
AGHS3 |
0.1119 |
0.3241 |
68.68 |
0.35 |
0.7310 |
0.9993 |
| AGHS2 |
AGHS4 |
-1.5643 |
0.3241 |
68.68 |
-4.83 |
<.0001 |
<.0001 |
| AGHS3 |
AGHS4 |
-1.6762 |
0.3241 |
68.68 |
-5.17 |
<.0001 |
<.0001 |
Year*Family Lines
| AGHS4 |
13.0174 |
A |
| Â |
 |
 |
| AGHS2 |
11.4531 |
B |
| Â |
 |
B |
| AGHS3 |
11.3412 |
B |
| Â |
 |
B |
| AGHS1 |
11.1618 |
B |
| Â |
 |
B |
| AGH25 |
10.7768 |
B |
| Â |
 |
B |
| AGH2 |
10.7531 |
B |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.2837 |
0.3241 |
68.68 |
-0.88 |
0.3845 |
0.9519 |
| AGH2 |
AGHS1 |
-0.9029 |
0.3241 |
68.68 |
-2.79 |
0.0069 |
0.0656 |
| AGH2 |
AGHS2 |
-0.9487 |
0.3241 |
68.68 |
-2.93 |
0.0046 |
0.0451 |
| AGH2 |
AGHS3 |
-1.3610 |
0.3241 |
68.68 |
-4.20 |
<.0001 |
0.0007 |
| AGH2 |
AGHS4 |
-2.5997 |
0.3241 |
68.68 |
-8.02 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.6192 |
0.3241 |
68.68 |
-1.91 |
0.0603 |
0.4002 |
| AGH25 |
AGHS2 |
-0.6650 |
0.3241 |
68.68 |
-2.05 |
0.0440 |
0.3187 |
| AGH25 |
AGHS3 |
-1.0774 |
0.3241 |
68.68 |
-3.32 |
0.0014 |
0.0141 |
| AGH25 |
AGHS4 |
-2.3160 |
0.3241 |
68.68 |
-7.15 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.04586 |
0.3241 |
68.68 |
-0.14 |
0.8879 |
1.0000 |
| AGHS1 |
AGHS3 |
-0.4582 |
0.3241 |
68.68 |
-1.41 |
0.1620 |
0.7188 |
| AGHS1 |
AGHS4 |
-1.6969 |
0.3241 |
68.68 |
-5.23 |
<.0001 |
<.0001 |
| AGHS2 |
AGHS3 |
-0.4123 |
0.3241 |
68.68 |
-1.27 |
0.2077 |
0.7998 |
| AGHS2 |
AGHS4 |
-1.6510 |
0.3241 |
68.68 |
-5.09 |
<.0001 |
<.0001 |
| AGHS3 |
AGHS4 |
-1.2387 |
0.3241 |
68.68 |
-3.82 |
0.0003 |
0.0027 |
Year*Family Lines
| AGHS4 |
11.8992 |
 |
A |
 |
| Â |
 |
 |
 |
 |
| AGHS3 |
10.6605 |
 |
B |
 |
| Â |
 |
 |
B |
 |
| AGHS2 |
10.2482 |
C |
B |
 |
| Â |
 |
C |
B |
 |
| AGHS1 |
10.2023 |
C |
B |
D |
| Â |
 |
C |
 |
D |
| AGH25 |
9.5831 |
C |
 |
D |
| Â |
 |
 |
 |
D |
| AGH2 |
9.2995 |
 |
 |
D |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.09482 |
0.3241 |
68.68 |
-0.29 |
0.7708 |
0.9997 |
| AGH2 |
AGHS1 |
-1.5896 |
0.3241 |
68.68 |
-4.90 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.6557 |
0.3241 |
68.68 |
-5.11 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-0.6881 |
0.3241 |
68.68 |
-2.12 |
0.0374 |
0.2815 |
| AGH2 |
AGHS4 |
-1.7722 |
0.3241 |
68.68 |
-5.47 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-1.4948 |
0.3241 |
68.68 |
-4.61 |
<.0001 |
0.0001 |
| AGH25 |
AGHS2 |
-1.5609 |
0.3241 |
68.68 |
-4.82 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.5933 |
0.3241 |
68.68 |
-1.83 |
0.0715 |
0.4497 |
| AGH25 |
AGHS4 |
-1.6774 |
0.3241 |
68.68 |
-5.17 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.06610 |
0.3241 |
68.68 |
-0.20 |
0.8390 |
1.0000 |
| AGHS1 |
AGHS3 |
0.9015 |
0.3241 |
68.68 |
2.78 |
0.0070 |
0.0663 |
| AGHS1 |
AGHS4 |
-0.1826 |
0.3241 |
68.68 |
-0.56 |
0.5751 |
0.9932 |
| AGHS2 |
AGHS3 |
0.9676 |
0.3241 |
68.68 |
2.99 |
0.0039 |
0.0384 |
| AGHS2 |
AGHS4 |
-0.1165 |
0.3241 |
68.68 |
-0.36 |
0.7204 |
0.9992 |
| AGHS3 |
AGHS4 |
-1.0841 |
0.3241 |
68.68 |
-3.34 |
0.0013 |
0.0132 |
Year*Family Lines
| AGHS4 |
3.3951 |
 |
A |
| Â |
 |
 |
A |
| AGHS2 |
3.2786 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
3.2125 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
2.3110 |
B |
C |
| Â |
 |
 |
C |
| AGH25 |
1.7177 |
 |
C |
| Â |
 |
 |
C |
| AGH2 |
1.6229 |
 |
C |
LS-Means Results
Family LS-Means
| AGH2 |
6.6064 |
0.1930 |
36 |
34.23 |
<.0001 |
| AGH25 |
6.8437 |
0.1930 |
36 |
35.45 |
<.0001 |
| AGHS1 |
7.7019 |
0.1930 |
36 |
39.90 |
<.0001 |
| AGHS2 |
7.8216 |
0.1930 |
36 |
40.52 |
<.0001 |
| AGHS3 |
7.6150 |
0.1930 |
36 |
39.45 |
<.0001 |
| AGHS4 |
8.9504 |
0.1930 |
36 |
46.37 |
<.0001 |
Family Diffs
| AGH2 |
AGH25 |
-0.2373 |
0.2730 |
36 |
-0.87 |
0.3905 |
0.9514 |
| AGH2 |
AGHS1 |
-1.0955 |
0.2730 |
36 |
-4.01 |
0.0003 |
0.0037 |
| AGH2 |
AGHS2 |
-1.2152 |
0.2730 |
36 |
-4.45 |
<.0001 |
0.0010 |
| AGH2 |
AGHS3 |
-1.0086 |
0.2730 |
36 |
-3.69 |
0.0007 |
0.0088 |
| AGH2 |
AGHS4 |
-2.3440 |
0.2730 |
36 |
-8.59 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.8582 |
0.2730 |
36 |
-3.14 |
0.0033 |
0.0362 |
| AGH25 |
AGHS2 |
-0.9780 |
0.2730 |
36 |
-3.58 |
0.0010 |
0.0118 |
| AGH25 |
AGHS3 |
-0.7713 |
0.2730 |
36 |
-2.83 |
0.0077 |
0.0760 |
| AGH25 |
AGHS4 |
-2.1067 |
0.2730 |
36 |
-7.72 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.1197 |
0.2730 |
36 |
-0.44 |
0.6635 |
0.9978 |
| AGHS1 |
AGHS3 |
0.08690 |
0.2730 |
36 |
0.32 |
0.7521 |
0.9995 |
| AGHS1 |
AGHS4 |
-1.2485 |
0.2730 |
36 |
-4.57 |
<.0001 |
0.0007 |
| AGHS2 |
AGHS3 |
0.2066 |
0.2730 |
36 |
0.76 |
0.4540 |
0.9729 |
| AGHS2 |
AGHS4 |
-1.1288 |
0.2730 |
36 |
-4.14 |
0.0002 |
0.0026 |
| AGHS3 |
AGHS4 |
-1.3354 |
0.2730 |
36 |
-4.89 |
<.0001 |
0.0003 |
Family Lines
| AGHS4 |
8.9504 |
 |
A |
| Â |
 |
 |
 |
| AGHS2 |
7.8216 |
 |
B |
| Â |
 |
 |
B |
| AGHS1 |
7.7019 |
 |
B |
| Â |
 |
 |
B |
| AGHS3 |
7.6150 |
C |
B |
| Â |
 |
C |
 |
| AGH25 |
6.8437 |
C |
D |
| Â |
 |
 |
D |
| AGH2 |
6.6064 |
 |
D |
SAS Output Height
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Results: hane.sas
Results: hane.sas
The Glimmix Procedure
Model Information
| WORK.HEIGHT |
| Height |
| Gaussian |
| Identity |
| Default |
| GLB |
| Restricted Maximum Likelihood |
| Kenward-Roger |
| Kenward-Roger |
Class Level Information
| 8 |
Fifth First Fourth Initial Second Seventh Sixth Third |
| 2 |
Hill Farm LA Tech |
| 4 |
1 2 3 4 |
| 6 |
AGH2 AGH25 AGHS1 AGHS2 AGHS3 AGHS4 |
| 48 |
AGH25_Hill Farm_1 AGH25_Hill Farm_2 AGH25_Hill Farm_3 AGH25_Hill Farm_4 AGH25_LA Tech_1 AGH25_LA Tech_2 AGH25_LA Tech_3 AGH25_LA Tech_4 AGH2_Hill Farm_1 AGH2_Hill Farm_2 AGH2_Hill Farm_3 AGH2_Hill Farm_4 AGH2_LA Tech_1 AGH2_LA Tech_2 AGH2_LA Tech_3 AGH2_LA Tech_4 AGHS1_Hill Farm_1 AGHS1_Hill Farm_2 AGHS1_Hill Farm_3 AGHS1_Hill Farm_4 AGHS1_LA Tech_1 AGHS1_LA Tech_2 AGHS1_LA Tech_3 AGHS1_LA Tech_4 AGHS2_Hill Farm_1 AGHS2_Hill Farm_2 AGHS2_Hill Farm_3 AGHS2_Hill Farm_4 AGHS2_LA Tech_1 AGHS2_LA Tech_2 AGHS2_LA Tech_3 AGHS2_LA Tech_4 AGHS3_Hill Farm_1 AGHS3_Hill Farm_2 AGHS3_Hill Farm_3 AGHS3_Hill Farm_4 AGHS3_LA Tech_1 AGHS3_LA Tech_2 AGHS3_LA Tech_3 AGHS3_LA Tech_4 AGHS4_Hill Farm_1 AGHS4_Hill Farm_2 AGHS4_Hill Farm_3 AGHS4_Hill Farm_4 AGHS4_LA Tech_1 AGHS4_LA Tech_2 AGHS4_LA Tech_3 AGHS4_LA Tech_4 |
Number of Observations
Dimensions
Optimization Information
| Dual Quasi-Newton |
| 2 |
| 2 |
| 1 |
| Profiled |
| Profiled |
| Data |
Iteration History
| 4 |
419.85607123 |
. |
3.56E-12 |
Convergence Status
| Convergence criterion (ABSGCONV=0.00001) satisfied. |
Hessian Matrix
| Variance |
GLB |
80.0040 |
 |
| AR(1) |
GLB |
 |
 |
Fit Statistics
| 419.86 |
| 425.86 |
| 425.94 |
| 431.47 |
| 434.47 |
| 427.98 |
| 37.31 |
| 0.13 |
Covariance Parameter Estimates
| GLB |
0.06509 |
0.01921 |
| GLB |
0 |
. |
| Â |
0.1295 |
0.01154 |
Solutions for Fixed Effects
| Â |
 |
 |
3.6033 |
0.2206 |
161.5 |
16.34 |
<.0001 |
| Fifth |
 |
 |
3.7856 |
0.2545 |
252 |
14.88 |
<.0001 |
| First |
 |
 |
-2.6121 |
0.2545 |
252 |
-10.26 |
<.0001 |
| Fourth |
 |
 |
2.2226 |
0.2545 |
252 |
8.73 |
<.0001 |
| Initial |
 |
 |
-3.0528 |
0.2545 |
252 |
-12.00 |
<.0001 |
| Second |
 |
 |
-1.2216 |
0.2545 |
252 |
-4.80 |
<.0001 |
| Seventh |
 |
 |
5.8582 |
0.2545 |
252 |
23.02 |
<.0001 |
| Sixth |
 |
 |
5.9387 |
0.2545 |
252 |
23.34 |
<.0001 |
| Third |
 |
 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
 |
-0.7677 |
0.3119 |
161.5 |
-2.46 |
0.0149 |
| Â |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
 |
-0.3317 |
0.3599 |
252 |
-0.92 |
0.3575 |
| Fifth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| First |
Hill Farm |
 |
0.7031 |
0.3599 |
252 |
1.95 |
0.0518 |
| First |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Fourth |
Hill Farm |
 |
-0.5411 |
0.3599 |
252 |
-1.50 |
0.1340 |
| Fourth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Initial |
Hill Farm |
 |
0.7707 |
0.3599 |
252 |
2.14 |
0.0332 |
| Initial |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
 |
0.4508 |
0.3599 |
252 |
1.25 |
0.2115 |
| Second |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
 |
1.0020 |
0.3599 |
252 |
2.78 |
0.0058 |
| Seventh |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
 |
-2.5706 |
0.3599 |
252 |
-7.14 |
<.0001 |
| Sixth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Â |
 |
AGH2 |
-0.9547 |
0.3119 |
161.5 |
-3.06 |
0.0026 |
| Â |
 |
AGH25 |
-0.7602 |
0.3119 |
161.5 |
-2.44 |
0.0159 |
| Â |
 |
AGHS1 |
0.2949 |
0.3119 |
161.5 |
0.95 |
0.3459 |
| Â |
 |
AGHS2 |
0.4191 |
0.3119 |
161.5 |
1.34 |
0.1810 |
| Â |
 |
AGHS3 |
-0.3812 |
0.3119 |
161.5 |
-1.22 |
0.2235 |
| Â |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
 |
AGH2 |
-0.4696 |
0.3599 |
252 |
-1.30 |
0.1931 |
| Fifth |
 |
AGH25 |
-0.04786 |
0.3599 |
252 |
-0.13 |
0.8943 |
| Fifth |
 |
AGHS1 |
-0.1533 |
0.3599 |
252 |
-0.43 |
0.6706 |
| Fifth |
 |
AGHS2 |
-0.05521 |
0.3599 |
252 |
-0.15 |
0.8782 |
| Fifth |
 |
AGHS3 |
-0.09546 |
0.3599 |
252 |
-0.27 |
0.7910 |
| Fifth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
 |
AGH2 |
0.6650 |
0.3599 |
252 |
1.85 |
0.0658 |
| First |
 |
AGH25 |
0.4395 |
0.3599 |
252 |
1.22 |
0.2232 |
| First |
 |
AGHS1 |
-0.3370 |
0.3599 |
252 |
-0.94 |
0.3500 |
| First |
 |
AGHS2 |
-0.4107 |
0.3599 |
252 |
-1.14 |
0.2549 |
| First |
 |
AGHS3 |
0.2685 |
0.3599 |
252 |
0.75 |
0.4563 |
| First |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
 |
AGH2 |
-0.5640 |
0.3599 |
252 |
-1.57 |
0.1184 |
| Fourth |
 |
AGH25 |
-0.3129 |
0.3599 |
252 |
-0.87 |
0.3855 |
| Fourth |
 |
AGHS1 |
-0.06452 |
0.3599 |
252 |
-0.18 |
0.8579 |
| Fourth |
 |
AGHS2 |
0.07452 |
0.3599 |
252 |
0.21 |
0.8361 |
| Fourth |
 |
AGHS3 |
0.06692 |
0.3599 |
252 |
0.19 |
0.8526 |
| Fourth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
 |
AGH2 |
0.8553 |
0.3599 |
252 |
2.38 |
0.0182 |
| Initial |
 |
AGH25 |
0.6140 |
0.3599 |
252 |
1.71 |
0.0892 |
| Initial |
 |
AGHS1 |
-0.3388 |
0.3599 |
252 |
-0.94 |
0.3474 |
| Initial |
 |
AGHS2 |
-0.5205 |
0.3599 |
252 |
-1.45 |
0.1494 |
| Initial |
 |
AGHS3 |
0.3439 |
0.3599 |
252 |
0.96 |
0.3402 |
| Initial |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
 |
AGH2 |
0.1622 |
0.3599 |
252 |
0.45 |
0.6525 |
| Second |
 |
AGH25 |
0.1249 |
0.3599 |
252 |
0.35 |
0.7288 |
| Second |
 |
AGHS1 |
-0.1838 |
0.3599 |
252 |
-0.51 |
0.6100 |
| Second |
 |
AGHS2 |
-0.05966 |
0.3599 |
252 |
-0.17 |
0.8685 |
| Second |
 |
AGHS3 |
0.1786 |
0.3599 |
252 |
0.50 |
0.6201 |
| Second |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
 |
AGH2 |
-0.1003 |
0.3599 |
252 |
-0.28 |
0.7808 |
| Seventh |
 |
AGH25 |
-0.1628 |
0.3599 |
252 |
-0.45 |
0.6514 |
| Seventh |
 |
AGHS1 |
-0.2814 |
0.3599 |
252 |
-0.78 |
0.4351 |
| Seventh |
 |
AGHS2 |
-0.3133 |
0.3599 |
252 |
-0.87 |
0.3849 |
| Seventh |
 |
AGHS3 |
0.3029 |
0.3599 |
252 |
0.84 |
0.4009 |
| Seventh |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGH2 |
-1.4486 |
0.3599 |
252 |
-4.02 |
<.0001 |
| Sixth |
 |
AGH25 |
-0.9490 |
0.3599 |
252 |
-2.64 |
0.0089 |
| Sixth |
 |
AGHS1 |
-0.06103 |
0.3599 |
252 |
-0.17 |
0.8655 |
| Sixth |
 |
AGHS2 |
-0.1143 |
0.3599 |
252 |
-0.32 |
0.7511 |
| Sixth |
 |
AGHS3 |
-0.05486 |
0.3599 |
252 |
-0.15 |
0.8790 |
| Sixth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
 |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
 |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
AGH2 |
0.4218 |
0.4412 |
161.5 |
0.96 |
0.3404 |
| Â |
Hill Farm |
AGH25 |
0.3009 |
0.4412 |
161.5 |
0.68 |
0.4962 |
| Â |
Hill Farm |
AGHS1 |
-0.02870 |
0.4412 |
161.5 |
-0.07 |
0.9482 |
| Â |
Hill Farm |
AGHS2 |
-0.3231 |
0.4412 |
161.5 |
-0.73 |
0.4650 |
| Â |
Hill Farm |
AGHS3 |
-0.05930 |
0.4412 |
161.5 |
-0.13 |
0.8932 |
| Â |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
AGH2 |
-0.4498 |
0.5090 |
252 |
-0.88 |
0.3776 |
| Fifth |
Hill Farm |
AGH25 |
-0.5438 |
0.5090 |
252 |
-1.07 |
0.2863 |
| Fifth |
Hill Farm |
AGHS1 |
-0.3138 |
0.5090 |
252 |
-0.62 |
0.5381 |
| Fifth |
Hill Farm |
AGHS2 |
0.1410 |
0.5090 |
252 |
0.28 |
0.7820 |
| Fifth |
Hill Farm |
AGHS3 |
-0.3825 |
0.5090 |
252 |
-0.75 |
0.4531 |
| Fifth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
Hill Farm |
AGH2 |
-0.3662 |
0.5090 |
252 |
-0.72 |
0.4725 |
| First |
Hill Farm |
AGH25 |
-0.1775 |
0.5090 |
252 |
-0.35 |
0.7276 |
| First |
Hill Farm |
AGHS1 |
0.1585 |
0.5090 |
252 |
0.31 |
0.7557 |
| First |
Hill Farm |
AGHS2 |
0.3192 |
0.5090 |
252 |
0.63 |
0.5312 |
| First |
Hill Farm |
AGHS3 |
0.1219 |
0.5090 |
252 |
0.24 |
0.8109 |
| First |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| First |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
Hill Farm |
AGH2 |
-0.1764 |
0.5090 |
252 |
-0.35 |
0.7292 |
| Fourth |
Hill Farm |
AGH25 |
-0.2610 |
0.5090 |
252 |
-0.51 |
0.6086 |
| Fourth |
Hill Farm |
AGHS1 |
-0.08584 |
0.5090 |
252 |
-0.17 |
0.8662 |
| Fourth |
Hill Farm |
AGHS2 |
0.07420 |
0.5090 |
252 |
0.15 |
0.8842 |
| Fourth |
Hill Farm |
AGHS3 |
-0.2134 |
0.5090 |
252 |
-0.42 |
0.6754 |
| Fourth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Fourth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
Hill Farm |
AGH2 |
-0.4515 |
0.5090 |
252 |
-0.89 |
0.3759 |
| Initial |
Hill Farm |
AGH25 |
-0.2910 |
0.5090 |
252 |
-0.57 |
0.5681 |
| Initial |
Hill Farm |
AGHS1 |
0.08518 |
0.5090 |
252 |
0.17 |
0.8672 |
| Initial |
Hill Farm |
AGHS2 |
0.3375 |
0.5090 |
252 |
0.66 |
0.5079 |
| Initial |
Hill Farm |
AGHS3 |
0.08876 |
0.5090 |
252 |
0.17 |
0.8617 |
| Initial |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Initial |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
Hill Farm |
AGH2 |
-0.1221 |
0.5090 |
252 |
-0.24 |
0.8106 |
| Second |
Hill Farm |
AGH25 |
-0.1298 |
0.5090 |
252 |
-0.26 |
0.7989 |
| Second |
Hill Farm |
AGHS1 |
0.06376 |
0.5090 |
252 |
0.13 |
0.9004 |
| Second |
Hill Farm |
AGHS2 |
0.1648 |
0.5090 |
252 |
0.32 |
0.7463 |
| Second |
Hill Farm |
AGHS3 |
0.1828 |
0.5090 |
252 |
0.36 |
0.7197 |
| Second |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Second |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
AGH2 |
-0.6213 |
0.5090 |
252 |
-1.22 |
0.2234 |
| Seventh |
Hill Farm |
AGH25 |
-0.9667 |
0.5090 |
252 |
-1.90 |
0.0587 |
| Seventh |
Hill Farm |
AGHS1 |
0.1514 |
0.5090 |
252 |
0.30 |
0.7664 |
| Seventh |
Hill Farm |
AGHS2 |
0.2505 |
0.5090 |
252 |
0.49 |
0.6230 |
| Seventh |
Hill Farm |
AGHS3 |
-1.0173 |
0.5090 |
252 |
-2.00 |
0.0467 |
| Seventh |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGH2 |
1.1240 |
0.5090 |
252 |
2.21 |
0.0281 |
| Sixth |
Hill Farm |
AGH25 |
0.5276 |
0.5090 |
252 |
1.04 |
0.3010 |
| Sixth |
Hill Farm |
AGHS1 |
0.06816 |
0.5090 |
252 |
0.13 |
0.8936 |
| Sixth |
Hill Farm |
AGHS2 |
0.3570 |
0.5090 |
252 |
0.70 |
0.4838 |
| Sixth |
Hill Farm |
AGHS3 |
0.1141 |
0.5090 |
252 |
0.22 |
0.8228 |
| Sixth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Third |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
Type III Tests of Fixed Effects
| 7 |
252 |
3715.43 |
<.0001 |
| 1 |
36 |
100.98 |
<.0001 |
| 7 |
252 |
95.45 |
<.0001 |
| 5 |
36 |
21.61 |
<.0001 |
| 35 |
252 |
5.27 |
<.0001 |
| 5 |
36 |
0.70 |
0.6304 |
| 35 |
252 |
1.24 |
0.1731 |
Solution for Random Effects
| GLB AGH25_Hill Farm_1 |
-0.1321 |
0.1622 |
46.92 |
-0.81 |
0.4196 |
0.05 |
-0.4584 |
0.1942 |
| GLB AGH25_Hill Farm_2 |
0.06641 |
0.1622 |
46.92 |
0.41 |
0.6841 |
0.05 |
-0.2599 |
0.3927 |
| GLB AGH25_Hill Farm_3 |
-0.09112 |
0.1622 |
46.92 |
-0.56 |
0.5769 |
0.05 |
-0.4174 |
0.2352 |
| GLB AGH25_Hill Farm_4 |
0.1568 |
0.1622 |
46.92 |
0.97 |
0.3387 |
0.05 |
-0.1695 |
0.4831 |
| GLB AGH25_LA Tech_1 |
-0.1835 |
0.1622 |
46.92 |
-1.13 |
0.2637 |
0.05 |
-0.5098 |
0.1428 |
| GLB AGH25_LA Tech_2 |
-0.1597 |
0.1622 |
46.92 |
-0.98 |
0.3299 |
0.05 |
-0.4860 |
0.1666 |
| GLB AGH25_LA Tech_3 |
0.07326 |
0.1622 |
46.92 |
0.45 |
0.6536 |
0.05 |
-0.2530 |
0.3995 |
| GLB AGH25_LA Tech_4 |
0.2699 |
0.1622 |
46.92 |
1.66 |
0.1027 |
0.05 |
-0.05639 |
0.5962 |
| GLB AGH2_Hill Farm_1 |
-0.07375 |
0.1622 |
46.92 |
-0.45 |
0.6514 |
0.05 |
-0.4000 |
0.2525 |
| GLB AGH2_Hill Farm_2 |
-0.08202 |
0.1622 |
46.92 |
-0.51 |
0.6154 |
0.05 |
-0.4083 |
0.2443 |
| GLB AGH2_Hill Farm_3 |
0.1422 |
0.1622 |
46.92 |
0.88 |
0.3849 |
0.05 |
-0.1841 |
0.4685 |
| GLB AGH2_Hill Farm_4 |
0.01353 |
0.1622 |
46.92 |
0.08 |
0.9339 |
0.05 |
-0.3128 |
0.3398 |
| GLB AGH2_LA Tech_1 |
-0.1325 |
0.1622 |
46.92 |
-0.82 |
0.4180 |
0.05 |
-0.4588 |
0.1938 |
| GLB AGH2_LA Tech_2 |
-0.1581 |
0.1622 |
46.92 |
-0.97 |
0.3346 |
0.05 |
-0.4844 |
0.1682 |
| GLB AGH2_LA Tech_3 |
0.4081 |
0.1622 |
46.92 |
2.52 |
0.0153 |
0.05 |
0.08183 |
0.7344 |
| GLB AGH2_LA Tech_4 |
-0.1175 |
0.1622 |
46.92 |
-0.72 |
0.4724 |
0.05 |
-0.4438 |
0.2088 |
| GLB AGHS1_Hill Farm_1 |
0.03870 |
0.1622 |
46.92 |
0.24 |
0.8124 |
0.05 |
-0.2876 |
0.3650 |
| GLB AGHS1_Hill Farm_2 |
0.03476 |
0.1622 |
46.92 |
0.21 |
0.8312 |
0.05 |
-0.2915 |
0.3611 |
| GLB AGHS1_Hill Farm_3 |
0.2445 |
0.1622 |
46.92 |
1.51 |
0.1384 |
0.05 |
-0.08179 |
0.5708 |
| GLB AGHS1_Hill Farm_4 |
-0.3180 |
0.1622 |
46.92 |
-1.96 |
0.0559 |
0.05 |
-0.6443 |
0.008324 |
| GLB AGHS1_LA Tech_1 |
-0.2625 |
0.1622 |
46.92 |
-1.62 |
0.1123 |
0.05 |
-0.5888 |
0.06382 |
| GLB AGHS1_LA Tech_2 |
0.03883 |
0.1622 |
46.92 |
0.24 |
0.8118 |
0.05 |
-0.2875 |
0.3651 |
| GLB AGHS1_LA Tech_3 |
0.3097 |
0.1622 |
46.92 |
1.91 |
0.0623 |
0.05 |
-0.01662 |
0.6360 |
| GLB AGHS1_LA Tech_4 |
-0.08603 |
0.1622 |
46.92 |
-0.53 |
0.5983 |
0.05 |
-0.4123 |
0.2403 |
| GLB AGHS2_Hill Farm_1 |
-0.2649 |
0.1622 |
46.92 |
-1.63 |
0.1091 |
0.05 |
-0.5912 |
0.06140 |
| GLB AGHS2_Hill Farm_2 |
-0.2065 |
0.1622 |
46.92 |
-1.27 |
0.2093 |
0.05 |
-0.5328 |
0.1198 |
| GLB AGHS2_Hill Farm_3 |
0.2849 |
0.1622 |
46.92 |
1.76 |
0.0856 |
0.05 |
-0.04144 |
0.6111 |
| GLB AGHS2_Hill Farm_4 |
0.1865 |
0.1622 |
46.92 |
1.15 |
0.2560 |
0.05 |
-0.1398 |
0.5128 |
| GLB AGHS2_LA Tech_1 |
-0.2952 |
0.1622 |
46.92 |
-1.82 |
0.0751 |
0.05 |
-0.6215 |
0.03107 |
| GLB AGHS2_LA Tech_2 |
-0.01269 |
0.1622 |
46.92 |
-0.08 |
0.9380 |
0.05 |
-0.3390 |
0.3136 |
| GLB AGHS2_LA Tech_3 |
0.3123 |
0.1622 |
46.92 |
1.93 |
0.0602 |
0.05 |
-0.01401 |
0.6386 |
| GLB AGHS2_LA Tech_4 |
-0.00437 |
0.1622 |
46.92 |
-0.03 |
0.9786 |
0.05 |
-0.3307 |
0.3219 |
| GLB AGHS3_Hill Farm_1 |
-0.00285 |
0.1622 |
46.92 |
-0.02 |
0.9861 |
0.05 |
-0.3291 |
0.3234 |
| GLB AGHS3_Hill Farm_2 |
-0.4217 |
0.1622 |
46.92 |
-2.60 |
0.0124 |
0.05 |
-0.7480 |
-0.09539 |
| GLB AGHS3_Hill Farm_3 |
0.3871 |
0.1622 |
46.92 |
2.39 |
0.0211 |
0.05 |
0.06081 |
0.7134 |
| GLB AGHS3_Hill Farm_4 |
0.03743 |
0.1622 |
46.92 |
0.23 |
0.8185 |
0.05 |
-0.2889 |
0.3637 |
| GLB AGHS3_LA Tech_1 |
-0.2095 |
0.1622 |
46.92 |
-1.29 |
0.2029 |
0.05 |
-0.5357 |
0.1168 |
| GLB AGHS3_LA Tech_2 |
-0.09466 |
0.1622 |
46.92 |
-0.58 |
0.5623 |
0.05 |
-0.4209 |
0.2316 |
| GLB AGHS3_LA Tech_3 |
0.1860 |
0.1622 |
46.92 |
1.15 |
0.2573 |
0.05 |
-0.1403 |
0.5123 |
| GLB AGHS3_LA Tech_4 |
0.1181 |
0.1622 |
46.92 |
0.73 |
0.4701 |
0.05 |
-0.2082 |
0.4444 |
| GLB AGHS4_Hill Farm_1 |
-0.2830 |
0.1622 |
46.92 |
-1.75 |
0.0875 |
0.05 |
-0.6093 |
0.04324 |
| GLB AGHS4_Hill Farm_2 |
0.1853 |
0.1622 |
46.92 |
1.14 |
0.2590 |
0.05 |
-0.1410 |
0.5116 |
| GLB AGHS4_Hill Farm_3 |
-0.00433 |
0.1622 |
46.92 |
-0.03 |
0.9788 |
0.05 |
-0.3306 |
0.3220 |
| GLB AGHS4_Hill Farm_4 |
0.1021 |
0.1622 |
46.92 |
0.63 |
0.5322 |
0.05 |
-0.2242 |
0.4284 |
| GLB AGHS4_LA Tech_1 |
-0.2516 |
0.1622 |
46.92 |
-1.55 |
0.1275 |
0.05 |
-0.5779 |
0.07465 |
| GLB AGHS4_LA Tech_2 |
-0.07550 |
0.1622 |
46.92 |
-0.47 |
0.6437 |
0.05 |
-0.4018 |
0.2508 |
| GLB AGHS4_LA Tech_3 |
0.1680 |
0.1622 |
46.92 |
1.04 |
0.3055 |
0.05 |
-0.1583 |
0.4943 |
| GLB AGHS4_LA Tech_4 |
0.1591 |
0.1622 |
46.92 |
0.98 |
0.3316 |
0.05 |
-0.1672 |
0.4854 |
Slices
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.3057 |
0.1274 |
161.5 |
-10.25 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
7.0217 |
A |
| Â |
 |
 |
| Hill Farm |
5.7160 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-0.00330 |
0.1274 |
161.5 |
-0.03 |
0.9793 |
0.9793 |
Year*Location Lines
| LA Tech |
0.8650 |
A |
| Â |
 |
A |
| Hill Farm |
0.8617 |
A |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-1.3672 |
0.1274 |
161.5 |
-10.74 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
5.4623 |
A |
| Â |
 |
 |
| Hill Farm |
4.0950 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
0.01642 |
0.1274 |
161.5 |
0.13 |
0.8976 |
0.8975 |
Year*Location Lines
| Hill Farm |
0.4955 |
A |
| Â |
 |
A |
| LA Tech |
0.4791 |
A |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-0.2384 |
0.1274 |
161.5 |
-1.87 |
0.0631 |
0.0624 |
Year*Location Lines
| LA Tech |
2.1884 |
A |
| Â |
 |
A |
| Hill Farm |
1.9500 |
A |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-0.08095 |
0.1274 |
161.5 |
-0.64 |
0.5259 |
0.5256 |
Year*Location Lines
| LA Tech |
9.1387 |
A |
| Â |
 |
A |
| Hill Farm |
9.0577 |
A |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-2.9212 |
0.1274 |
161.5 |
-22.94 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
8.8736 |
A |
| Â |
 |
 |
| Hill Farm |
5.9524 |
B |
Year*Location F Test
Year*Location Diffs
| Hill Farm |
LA Tech |
-0.7158 |
0.1274 |
161.5 |
-5.62 |
<.0001 |
<.0001 |
Year*Location Lines
| LA Tech |
3.3729 |
A |
| Â |
 |
 |
| Hill Farm |
2.6572 |
B |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.5088 |
0.2206 |
161.5 |
-2.31 |
0.0223 |
0.1952 |
| AGH2 |
AGHS1 |
-1.4087 |
0.2206 |
161.5 |
-6.39 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.7111 |
0.2206 |
161.5 |
-7.76 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-0.7408 |
0.2206 |
161.5 |
-3.36 |
0.0010 |
0.0115 |
| AGH2 |
AGHS4 |
-1.4383 |
0.2206 |
161.5 |
-6.52 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.8999 |
0.2206 |
161.5 |
-4.08 |
<.0001 |
0.0009 |
| AGH25 |
AGHS2 |
-1.2023 |
0.2206 |
161.5 |
-5.45 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.2320 |
0.2206 |
161.5 |
-1.05 |
0.2945 |
0.8997 |
| AGH25 |
AGHS4 |
-0.9295 |
0.2206 |
161.5 |
-4.21 |
<.0001 |
0.0005 |
| AGHS1 |
AGHS2 |
-0.3024 |
0.2206 |
161.5 |
-1.37 |
0.1723 |
0.7443 |
| AGHS1 |
AGHS3 |
0.6679 |
0.2206 |
161.5 |
3.03 |
0.0029 |
0.0321 |
| AGHS1 |
AGHS4 |
-0.02959 |
0.2206 |
161.5 |
-0.13 |
0.8934 |
1.0000 |
| AGHS2 |
AGHS3 |
0.9704 |
0.2206 |
161.5 |
4.40 |
<.0001 |
0.0002 |
| AGHS2 |
AGHS4 |
0.2728 |
0.2206 |
161.5 |
1.24 |
0.2179 |
0.8183 |
| AGHS3 |
AGHS4 |
-0.6975 |
0.2206 |
161.5 |
-3.16 |
0.0019 |
0.0215 |
Year*Family Lines
| AGHS2 |
7.1120 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
6.8392 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
6.8096 |
 |
A |
| Â |
 |
 |
 |
| AGHS3 |
6.1416 |
 |
B |
| Â |
 |
 |
B |
| AGH25 |
5.9097 |
C |
B |
| Â |
 |
C |
 |
| AGH2 |
5.4008 |
C |
 |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.00289 |
0.2206 |
161.5 |
-0.01 |
0.9896 |
1.0000 |
| AGH2 |
AGHS1 |
-0.2847 |
0.2206 |
161.5 |
-1.29 |
0.1986 |
0.7899 |
| AGH2 |
AGHS2 |
-0.2683 |
0.2206 |
161.5 |
-1.22 |
0.2256 |
0.8286 |
| AGH2 |
AGHS3 |
-0.1805 |
0.2206 |
161.5 |
-0.82 |
0.4143 |
0.9639 |
| AGH2 |
AGHS4 |
-0.2619 |
0.2206 |
161.5 |
-1.19 |
0.2368 |
0.8426 |
| AGH25 |
AGHS1 |
-0.2818 |
0.2206 |
161.5 |
-1.28 |
0.2032 |
0.7970 |
| AGH25 |
AGHS2 |
-0.2654 |
0.2206 |
161.5 |
-1.20 |
0.2306 |
0.8350 |
| AGH25 |
AGHS3 |
-0.1777 |
0.2206 |
161.5 |
-0.81 |
0.4218 |
0.9664 |
| AGH25 |
AGHS4 |
-0.2590 |
0.2206 |
161.5 |
-1.17 |
0.2420 |
0.8488 |
| AGHS1 |
AGHS2 |
0.01642 |
0.2206 |
161.5 |
0.07 |
0.9408 |
1.0000 |
| AGHS1 |
AGHS3 |
0.1042 |
0.2206 |
161.5 |
0.47 |
0.6374 |
0.9971 |
| AGHS1 |
AGHS4 |
0.02282 |
0.2206 |
161.5 |
0.10 |
0.9177 |
1.0000 |
| AGHS2 |
AGHS3 |
0.08776 |
0.2206 |
161.5 |
0.40 |
0.6913 |
0.9987 |
| AGHS2 |
AGHS4 |
0.006401 |
0.2206 |
161.5 |
0.03 |
0.9769 |
1.0000 |
| AGHS3 |
AGHS4 |
-0.08136 |
0.2206 |
161.5 |
-0.37 |
0.7127 |
0.9991 |
Year*Family Lines
| AGHS1 |
0.9817 |
A |
| Â |
 |
A |
| AGHS2 |
0.9653 |
A |
| Â |
 |
A |
| AGHS4 |
0.9589 |
A |
| Â |
 |
A |
| AGHS3 |
0.8775 |
A |
| Â |
 |
A |
| AGH25 |
0.6998 |
A |
| Â |
 |
A |
| AGH2 |
0.6970 |
A |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.3428 |
0.2206 |
161.5 |
-1.55 |
0.1221 |
0.6294 |
| AGH2 |
AGHS1 |
-1.5691 |
0.2206 |
161.5 |
-7.11 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.7651 |
0.2206 |
161.5 |
-8.00 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-0.9453 |
0.2206 |
161.5 |
-4.29 |
<.0001 |
0.0004 |
| AGH2 |
AGHS4 |
-1.3959 |
0.2206 |
161.5 |
-6.33 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-1.2262 |
0.2206 |
161.5 |
-5.56 |
<.0001 |
<.0001 |
| AGH25 |
AGHS2 |
-1.4223 |
0.2206 |
161.5 |
-6.45 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.6025 |
0.2206 |
161.5 |
-2.73 |
0.0070 |
0.0727 |
| AGH25 |
AGHS4 |
-1.0531 |
0.2206 |
161.5 |
-4.77 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.1960 |
0.2206 |
161.5 |
-0.89 |
0.3754 |
0.9490 |
| AGHS1 |
AGHS3 |
0.6237 |
0.2206 |
161.5 |
2.83 |
0.0053 |
0.0564 |
| AGHS1 |
AGHS4 |
0.1731 |
0.2206 |
161.5 |
0.78 |
0.4337 |
0.9699 |
| AGHS2 |
AGHS3 |
0.8198 |
0.2206 |
161.5 |
3.72 |
0.0003 |
0.0034 |
| AGHS2 |
AGHS4 |
0.3692 |
0.2206 |
161.5 |
1.67 |
0.0961 |
0.5505 |
| AGHS3 |
AGHS4 |
-0.4506 |
0.2206 |
161.5 |
-2.04 |
0.0427 |
0.3212 |
Year*Family Lines
| AGHS2 |
5.5407 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
5.3447 |
B |
A |
| Â |
 |
B |
A |
| AGHS4 |
5.1715 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
4.7209 |
B |
C |
| Â |
 |
 |
C |
| AGH25 |
4.1184 |
D |
C |
| Â |
 |
D |
 |
| AGH2 |
3.7756 |
D |
 |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
0.02700 |
0.2206 |
161.5 |
0.12 |
0.9027 |
1.0000 |
| AGH2 |
AGHS1 |
-0.09858 |
0.2206 |
161.5 |
-0.45 |
0.6555 |
0.9977 |
| AGH2 |
AGHS2 |
-0.02001 |
0.2206 |
161.5 |
-0.09 |
0.9278 |
1.0000 |
| AGH2 |
AGHS3 |
-0.09166 |
0.2206 |
161.5 |
-0.42 |
0.6783 |
0.9984 |
| AGH2 |
AGHS4 |
-0.1142 |
0.2206 |
161.5 |
-0.52 |
0.6053 |
0.9955 |
| AGH25 |
AGHS1 |
-0.1256 |
0.2206 |
161.5 |
-0.57 |
0.5699 |
0.9929 |
| AGH25 |
AGHS2 |
-0.04701 |
0.2206 |
161.5 |
-0.21 |
0.8315 |
0.9999 |
| AGH25 |
AGHS3 |
-0.1187 |
0.2206 |
161.5 |
-0.54 |
0.5914 |
0.9946 |
| AGH25 |
AGHS4 |
-0.1412 |
0.2206 |
161.5 |
-0.64 |
0.5230 |
0.9878 |
| AGHS1 |
AGHS2 |
0.07857 |
0.2206 |
161.5 |
0.36 |
0.7221 |
0.9992 |
| AGHS1 |
AGHS3 |
0.006927 |
0.2206 |
161.5 |
0.03 |
0.9750 |
1.0000 |
| AGHS1 |
AGHS4 |
-0.01562 |
0.2206 |
161.5 |
-0.07 |
0.9436 |
1.0000 |
| AGHS2 |
AGHS3 |
-0.07165 |
0.2206 |
161.5 |
-0.32 |
0.7457 |
0.9995 |
| AGHS2 |
AGHS4 |
-0.09420 |
0.2206 |
161.5 |
-0.43 |
0.6699 |
0.9982 |
| AGHS3 |
AGHS4 |
-0.02255 |
0.2206 |
161.5 |
-0.10 |
0.9187 |
1.0000 |
Year*Family Lines
| AGHS4 |
0.5520 |
A |
| Â |
 |
A |
| AGHS1 |
0.5363 |
A |
| Â |
 |
A |
| AGHS3 |
0.5294 |
A |
| Â |
 |
A |
| AGHS2 |
0.4578 |
A |
| Â |
 |
A |
| AGH2 |
0.4378 |
A |
| Â |
 |
A |
| AGH25 |
0.4108 |
A |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.09287 |
0.2206 |
161.5 |
-0.42 |
0.6743 |
0.9983 |
| AGH2 |
AGHS1 |
-0.7712 |
0.2206 |
161.5 |
-3.50 |
0.0006 |
0.0073 |
| AGH2 |
AGHS2 |
-0.9229 |
0.2206 |
161.5 |
-4.18 |
<.0001 |
0.0006 |
| AGH2 |
AGHS3 |
-0.5018 |
0.2206 |
161.5 |
-2.28 |
0.0242 |
0.2082 |
| AGH2 |
AGHS4 |
-0.6426 |
0.2206 |
161.5 |
-2.91 |
0.0041 |
0.0446 |
| AGH25 |
AGHS1 |
-0.6784 |
0.2206 |
161.5 |
-3.08 |
0.0025 |
0.0279 |
| AGH25 |
AGHS2 |
-0.8300 |
0.2206 |
161.5 |
-3.76 |
0.0002 |
0.0028 |
| AGH25 |
AGHS3 |
-0.4090 |
0.2206 |
161.5 |
-1.85 |
0.0656 |
0.4332 |
| AGH25 |
AGHS4 |
-0.5497 |
0.2206 |
161.5 |
-2.49 |
0.0137 |
0.1303 |
| AGHS1 |
AGHS2 |
-0.1517 |
0.2206 |
161.5 |
-0.69 |
0.4927 |
0.9832 |
| AGHS1 |
AGHS3 |
0.2694 |
0.2206 |
161.5 |
1.22 |
0.2237 |
0.8261 |
| AGHS1 |
AGHS4 |
0.1286 |
0.2206 |
161.5 |
0.58 |
0.5606 |
0.9921 |
| AGHS2 |
AGHS3 |
0.4211 |
0.2206 |
161.5 |
1.91 |
0.0580 |
0.3991 |
| AGHS2 |
AGHS4 |
0.2803 |
0.2206 |
161.5 |
1.27 |
0.2056 |
0.8007 |
| AGHS3 |
AGHS4 |
-0.1408 |
0.2206 |
161.5 |
-0.64 |
0.5243 |
0.9880 |
Year*Family Lines
| AGHS2 |
2.5035 |
 |
A |
 |
| Â |
 |
 |
A |
 |
| AGHS1 |
2.3519 |
 |
A |
 |
| Â |
 |
 |
A |
 |
| AGHS4 |
2.2232 |
B |
A |
 |
| Â |
 |
B |
A |
 |
| AGHS3 |
2.0825 |
B |
A |
C |
| Â |
 |
B |
 |
C |
| AGH25 |
1.6735 |
B |
 |
C |
| Â |
 |
 |
 |
C |
| AGH2 |
1.5806 |
 |
 |
C |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
0.1012 |
0.2206 |
161.5 |
0.46 |
0.6469 |
0.9974 |
| AGH2 |
AGHS1 |
-1.2296 |
0.2206 |
161.5 |
-5.57 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.2242 |
0.2206 |
161.5 |
-5.55 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-0.5381 |
0.2206 |
161.5 |
-2.44 |
0.0158 |
0.1468 |
| AGH2 |
AGHS4 |
-1.1547 |
0.2206 |
161.5 |
-5.23 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-1.3308 |
0.2206 |
161.5 |
-6.03 |
<.0001 |
<.0001 |
| AGH25 |
AGHS2 |
-1.3254 |
0.2206 |
161.5 |
-6.01 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.6393 |
0.2206 |
161.5 |
-2.90 |
0.0043 |
0.0465 |
| AGH25 |
AGHS4 |
-1.2559 |
0.2206 |
161.5 |
-5.69 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
0.005355 |
0.2206 |
161.5 |
0.02 |
0.9807 |
1.0000 |
| AGHS1 |
AGHS3 |
0.6915 |
0.2206 |
161.5 |
3.13 |
0.0020 |
0.0234 |
| AGHS1 |
AGHS4 |
0.07490 |
0.2206 |
161.5 |
0.34 |
0.7346 |
0.9994 |
| AGHS2 |
AGHS3 |
0.6861 |
0.2206 |
161.5 |
3.11 |
0.0022 |
0.0251 |
| AGHS2 |
AGHS4 |
0.06954 |
0.2206 |
161.5 |
0.32 |
0.7530 |
0.9996 |
| AGHS3 |
AGHS4 |
-0.6166 |
0.2206 |
161.5 |
-2.80 |
0.0058 |
0.0615 |
Year*Family Lines
| AGHS1 |
9.6536 |
 |
A |
| Â |
 |
 |
A |
| AGHS2 |
9.6482 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
9.5787 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
8.9621 |
B |
C |
| Â |
 |
 |
C |
| AGH2 |
8.4240 |
D |
C |
| Â |
 |
D |
 |
| AGH25 |
8.3228 |
D |
 |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.3353 |
0.2206 |
161.5 |
-1.52 |
0.1304 |
0.6515 |
| AGH2 |
AGHS1 |
-1.8840 |
0.2206 |
161.5 |
-8.54 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.9521 |
0.2206 |
161.5 |
-8.85 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-1.2217 |
0.2206 |
161.5 |
-5.54 |
<.0001 |
<.0001 |
| AGH2 |
AGHS4 |
-1.6303 |
0.2206 |
161.5 |
-7.39 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-1.5486 |
0.2206 |
161.5 |
-7.02 |
<.0001 |
<.0001 |
| AGH25 |
AGHS2 |
-1.6167 |
0.2206 |
161.5 |
-7.33 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.8864 |
0.2206 |
161.5 |
-4.02 |
<.0001 |
0.0011 |
| AGH25 |
AGHS4 |
-1.2950 |
0.2206 |
161.5 |
-5.87 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.06811 |
0.2206 |
161.5 |
-0.31 |
0.7579 |
0.9996 |
| AGHS1 |
AGHS3 |
0.6623 |
0.2206 |
161.5 |
3.00 |
0.0031 |
0.0346 |
| AGHS1 |
AGHS4 |
0.2536 |
0.2206 |
161.5 |
1.15 |
0.2519 |
0.8599 |
| AGHS2 |
AGHS3 |
0.7304 |
0.2206 |
161.5 |
3.31 |
0.0011 |
0.0135 |
| AGHS2 |
AGHS4 |
0.3217 |
0.2206 |
161.5 |
1.46 |
0.1466 |
0.6909 |
| AGHS3 |
AGHS4 |
-0.4086 |
0.2206 |
161.5 |
-1.85 |
0.0658 |
0.4341 |
Year*Family Lines
| AGHS2 |
8.1945 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
8.1264 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
7.8728 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
7.4642 |
B |
 |
| Â |
 |
 |
 |
| AGH25 |
6.5778 |
 |
C |
| Â |
 |
 |
C |
| AGH2 |
6.2425 |
 |
C |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.1341 |
0.2206 |
161.5 |
-0.61 |
0.5442 |
0.9904 |
| AGH2 |
AGHS1 |
-1.0244 |
0.2206 |
161.5 |
-4.64 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.0013 |
0.2206 |
161.5 |
-4.54 |
<.0001 |
0.0001 |
| AGH2 |
AGHS3 |
-0.3330 |
0.2206 |
161.5 |
-1.51 |
0.1331 |
0.6585 |
| AGH2 |
AGHS4 |
-0.7438 |
0.2206 |
161.5 |
-3.37 |
0.0009 |
0.0110 |
| AGH25 |
AGHS1 |
-0.8903 |
0.2206 |
161.5 |
-4.04 |
<.0001 |
0.0010 |
| AGH25 |
AGHS2 |
-0.8673 |
0.2206 |
161.5 |
-3.93 |
0.0001 |
0.0015 |
| AGH25 |
AGHS3 |
-0.1989 |
0.2206 |
161.5 |
-0.90 |
0.3686 |
0.9458 |
| AGH25 |
AGHS4 |
-0.6097 |
0.2206 |
161.5 |
-2.76 |
0.0064 |
0.0667 |
| AGHS1 |
AGHS2 |
0.02302 |
0.2206 |
161.5 |
0.10 |
0.9170 |
1.0000 |
| AGHS1 |
AGHS3 |
0.6914 |
0.2206 |
161.5 |
3.13 |
0.0020 |
0.0234 |
| AGHS1 |
AGHS4 |
0.2806 |
0.2206 |
161.5 |
1.27 |
0.2052 |
0.8000 |
| AGHS2 |
AGHS3 |
0.6684 |
0.2206 |
161.5 |
3.03 |
0.0028 |
0.0319 |
| AGHS2 |
AGHS4 |
0.2576 |
0.2206 |
161.5 |
1.17 |
0.2447 |
0.8518 |
| AGHS3 |
AGHS4 |
-0.4108 |
0.2206 |
161.5 |
-1.86 |
0.0643 |
0.4278 |
Year*Family Lines
| AGHS1 |
3.5000 |
 |
A |
| Â |
 |
 |
A |
| AGHS2 |
3.4770 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
3.2194 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
2.8086 |
B |
C |
| Â |
 |
B |
C |
| AGH25 |
2.6097 |
B |
C |
| Â |
 |
 |
C |
| AGH2 |
2.4756 |
 |
C |
LS-Means Results
Family LS-Means
| AGH2 |
3.6292 |
0.1008 |
36 |
36.01 |
<.0001 |
| AGH25 |
3.7903 |
0.1008 |
36 |
37.60 |
<.0001 |
| AGHS1 |
4.6630 |
0.1008 |
36 |
46.26 |
<.0001 |
| AGHS2 |
4.7374 |
0.1008 |
36 |
47.00 |
<.0001 |
| AGHS3 |
4.1983 |
0.1008 |
36 |
41.65 |
<.0001 |
| AGHS4 |
4.5520 |
0.1008 |
36 |
45.16 |
<.0001 |
Family Diffs
| AGH2 |
AGH25 |
-0.1611 |
0.1425 |
36 |
-1.13 |
0.2660 |
0.8656 |
| AGH2 |
AGHS1 |
-1.0338 |
0.1425 |
36 |
-7.25 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-1.1081 |
0.1425 |
36 |
-7.77 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-0.5691 |
0.1425 |
36 |
-3.99 |
0.0003 |
0.0039 |
| AGH2 |
AGHS4 |
-0.9227 |
0.1425 |
36 |
-6.47 |
<.0001 |
<.0001 |
| AGH25 |
AGHS1 |
-0.8727 |
0.1425 |
36 |
-6.12 |
<.0001 |
<.0001 |
| AGH25 |
AGHS2 |
-0.9471 |
0.1425 |
36 |
-6.64 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-0.4080 |
0.1425 |
36 |
-2.86 |
0.0070 |
0.0700 |
| AGH25 |
AGHS4 |
-0.7616 |
0.1425 |
36 |
-5.34 |
<.0001 |
<.0001 |
| AGHS1 |
AGHS2 |
-0.07436 |
0.1425 |
36 |
-0.52 |
0.6051 |
0.9950 |
| AGHS1 |
AGHS3 |
0.4647 |
0.1425 |
36 |
3.26 |
0.0024 |
0.0272 |
| AGHS1 |
AGHS4 |
0.1111 |
0.1425 |
36 |
0.78 |
0.4410 |
0.9693 |
| AGHS2 |
AGHS3 |
0.5390 |
0.1425 |
36 |
3.78 |
0.0006 |
0.0069 |
| AGHS2 |
AGHS4 |
0.1854 |
0.1425 |
36 |
1.30 |
0.2016 |
0.7827 |
| AGHS3 |
AGHS4 |
-0.3536 |
0.1425 |
36 |
-2.48 |
0.0179 |
0.1569 |
Family Lines
| AGHS2 |
4.7374 |
 |
A |
| Â |
 |
 |
A |
| AGHS1 |
4.6630 |
 |
A |
| Â |
 |
 |
A |
| AGHS4 |
4.5520 |
B |
A |
| Â |
 |
B |
 |
| AGHS3 |
4.1983 |
B |
C |
| Â |
 |
 |
C |
| AGH25 |
3.7903 |
D |
C |
| Â |
 |
D |
 |
| AGH2 |
3.6292 |
D |
 |
SAS Output Crown
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Results: hane.sas
Results: hane.sas
The Glimmix Procedure
Model Information
| WORK.CROWN |
| Crown |
| Gaussian |
| Identity |
| Default |
| GLB |
| Restricted Maximum Likelihood |
| Kenward-Roger |
| Kenward-Roger |
Class Level Information
| 3 |
Fifth Seventh Sixth |
| 2 |
Hill Farm LA Tech |
| 4 |
1 2 3 4 |
| 6 |
AGH2 AGH25 AGHS1 AGHS2 AGHS3 AGHS4 |
| 48 |
AGH25_Hill Farm_1 AGH25_Hill Farm_2 AGH25_Hill Farm_3 AGH25_Hill Farm_4 AGH25_LA Tech_1 AGH25_LA Tech_2 AGH25_LA Tech_3 AGH25_LA Tech_4 AGH2_Hill Farm_1 AGH2_Hill Farm_2 AGH2_Hill Farm_3 AGH2_Hill Farm_4 AGH2_LA Tech_1 AGH2_LA Tech_2 AGH2_LA Tech_3 AGH2_LA Tech_4 AGHS1_Hill Farm_1 AGHS1_Hill Farm_2 AGHS1_Hill Farm_3 AGHS1_Hill Farm_4 AGHS1_LA Tech_1 AGHS1_LA Tech_2 AGHS1_LA Tech_3 AGHS1_LA Tech_4 AGHS2_Hill Farm_1 AGHS2_Hill Farm_2 AGHS2_Hill Farm_3 AGHS2_Hill Farm_4 AGHS2_LA Tech_1 AGHS2_LA Tech_2 AGHS2_LA Tech_3 AGHS2_LA Tech_4 AGHS3_Hill Farm_1 AGHS3_Hill Farm_2 AGHS3_Hill Farm_3 AGHS3_Hill Farm_4 AGHS3_LA Tech_1 AGHS3_LA Tech_2 AGHS3_LA Tech_3 AGHS3_LA Tech_4 AGHS4_Hill Farm_1 AGHS4_Hill Farm_2 AGHS4_Hill Farm_3 AGHS4_Hill Farm_4 AGHS4_LA Tech_1 AGHS4_LA Tech_2 AGHS4_LA Tech_3 AGHS4_LA Tech_4 |
Number of Observations
Dimensions
Optimization Information
| Dual Quasi-Newton |
| 2 |
| 2 |
| 1 |
| Profiled |
| Profiled |
| Data |
Iteration History
| 4 |
327.11392315 |
. |
7.57E-13 |
Convergence Status
| Convergence criterion (ABSGCONV=0.00001) satisfied. |
Hessian Matrix
| Variance |
GLB |
14.9172 |
 |
| AR(1) |
GLB |
 |
 |
Fit Statistics
| 327.11 |
| 333.11 |
| 333.34 |
| 338.73 |
| 341.73 |
| 335.24 |
| 52.75 |
| 0.49 |
Covariance Parameter Estimates
| GLB |
0.4567 |
0.1485 |
| GLB |
0 |
. |
| Â |
0.4884 |
0.08140 |
Solutions for Fixed Effects
| Â |
 |
 |
4.6956 |
0.4861 |
73.62 |
9.66 |
<.0001 |
| Fifth |
 |
 |
-3.0771 |
0.4942 |
72 |
-6.23 |
<.0001 |
| Seventh |
 |
 |
1.0079 |
0.4942 |
72 |
2.04 |
0.0451 |
| Sixth |
 |
 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
 |
-2.5922 |
0.6874 |
73.62 |
-3.77 |
0.0003 |
| Â |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
 |
1.4553 |
0.6989 |
72 |
2.08 |
0.0409 |
| Fifth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
 |
-0.1176 |
0.6989 |
72 |
-0.17 |
0.8668 |
| Seventh |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
 |
0 |
. |
. |
. |
. |
| Â |
 |
AGH2 |
-3.0492 |
0.6874 |
73.62 |
-4.44 |
<.0001 |
| Â |
 |
AGH25 |
-2.3896 |
0.6874 |
73.62 |
-3.48 |
0.0009 |
| Â |
 |
AGHS1 |
0.5941 |
0.6874 |
73.62 |
0.86 |
0.3902 |
| Â |
 |
AGHS2 |
0.8519 |
0.6874 |
73.62 |
1.24 |
0.2192 |
| Â |
 |
AGHS3 |
-0.08741 |
0.6874 |
73.62 |
-0.13 |
0.8992 |
| Â |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
 |
AGH2 |
2.6497 |
0.6989 |
72 |
3.79 |
0.0003 |
| Fifth |
 |
AGH25 |
1.7974 |
0.6989 |
72 |
2.57 |
0.0122 |
| Fifth |
 |
AGHS1 |
-0.1967 |
0.6989 |
72 |
-0.28 |
0.7791 |
| Fifth |
 |
AGHS2 |
0.2015 |
0.6989 |
72 |
0.29 |
0.7739 |
| Fifth |
 |
AGHS3 |
0.3601 |
0.6989 |
72 |
0.52 |
0.6079 |
| Fifth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
 |
AGH2 |
0.2702 |
0.6989 |
72 |
0.39 |
0.7002 |
| Seventh |
 |
AGH25 |
-0.4015 |
0.6989 |
72 |
-0.57 |
0.5674 |
| Seventh |
 |
AGHS1 |
-0.2398 |
0.6989 |
72 |
-0.34 |
0.7325 |
| Seventh |
 |
AGHS2 |
-0.3092 |
0.6989 |
72 |
-0.44 |
0.6595 |
| Seventh |
 |
AGHS3 |
-0.6890 |
0.6989 |
72 |
-0.99 |
0.3275 |
| Seventh |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGH2 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGH25 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGHS1 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGHS2 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGHS3 |
0 |
. |
. |
. |
. |
| Sixth |
 |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
Hill Farm |
AGH2 |
1.8355 |
0.9722 |
73.62 |
1.89 |
0.0630 |
| Â |
Hill Farm |
AGH25 |
1.4387 |
0.9722 |
73.62 |
1.48 |
0.1432 |
| Â |
Hill Farm |
AGHS1 |
0.1333 |
0.9722 |
73.62 |
0.14 |
0.8913 |
| Â |
Hill Farm |
AGHS2 |
0.4140 |
0.9722 |
73.62 |
0.43 |
0.6714 |
| Â |
Hill Farm |
AGHS3 |
0.1992 |
0.9722 |
73.62 |
0.20 |
0.8382 |
| Â |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Â |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
Hill Farm |
AGH2 |
-1.4704 |
0.9883 |
72 |
-1.49 |
0.1412 |
| Fifth |
Hill Farm |
AGH25 |
-0.8170 |
0.9883 |
72 |
-0.83 |
0.4112 |
| Fifth |
Hill Farm |
AGHS1 |
-0.1838 |
0.9883 |
72 |
-0.19 |
0.8530 |
| Fifth |
Hill Farm |
AGHS2 |
-1.0488 |
0.9883 |
72 |
-1.06 |
0.2921 |
| Fifth |
Hill Farm |
AGHS3 |
-0.4048 |
0.9883 |
72 |
-0.41 |
0.6833 |
| Fifth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Fifth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
Hill Farm |
AGH2 |
-0.5397 |
0.9883 |
72 |
-0.55 |
0.5867 |
| Seventh |
Hill Farm |
AGH25 |
-0.4144 |
0.9883 |
72 |
-0.42 |
0.6762 |
| Seventh |
Hill Farm |
AGHS1 |
0.1666 |
0.9883 |
72 |
0.17 |
0.8666 |
| Seventh |
Hill Farm |
AGHS2 |
0.3237 |
0.9883 |
72 |
0.33 |
0.7443 |
| Seventh |
Hill Farm |
AGHS3 |
0.5593 |
0.9883 |
72 |
0.57 |
0.5732 |
| Seventh |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Seventh |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGH2 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGH25 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGHS1 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGHS2 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGHS3 |
0 |
. |
. |
. |
. |
| Sixth |
Hill Farm |
AGHS4 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGH25 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS1 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS2 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS3 |
0 |
. |
. |
. |
. |
| Sixth |
LA Tech |
AGHS4 |
0 |
. |
. |
. |
. |
Type III Tests of Fixed Effects
| 2 |
72 |
177.27 |
<.0001 |
| 1 |
36 |
55.25 |
<.0001 |
| 2 |
72 |
6.01 |
0.0039 |
| 5 |
36 |
12.64 |
<.0001 |
| 10 |
72 |
5.39 |
<.0001 |
| 5 |
36 |
0.82 |
0.5439 |
| 10 |
72 |
0.51 |
0.8776 |
Solution for Random Effects
| GLB AGH25_Hill Farm_1 |
-0.1422 |
0.4578 |
42.76 |
-0.31 |
0.7575 |
0.05 |
-1.0655 |
0.7811 |
| GLB AGH25_Hill Farm_2 |
0.2869 |
0.4578 |
42.76 |
0.63 |
0.5341 |
0.05 |
-0.6364 |
1.2102 |
| GLB AGH25_Hill Farm_3 |
-0.2848 |
0.4578 |
42.76 |
-0.62 |
0.5371 |
0.05 |
-1.2081 |
0.6385 |
| GLB AGH25_Hill Farm_4 |
0.1401 |
0.4578 |
42.76 |
0.31 |
0.7611 |
0.05 |
-0.7832 |
1.0634 |
| GLB AGH25_LA Tech_1 |
-0.6896 |
0.4578 |
42.76 |
-1.51 |
0.1393 |
0.05 |
-1.6129 |
0.2337 |
| GLB AGH25_LA Tech_2 |
0.1718 |
0.4578 |
42.76 |
0.38 |
0.7093 |
0.05 |
-0.7515 |
1.0951 |
| GLB AGH25_LA Tech_3 |
0.2293 |
0.4578 |
42.76 |
0.50 |
0.6190 |
0.05 |
-0.6940 |
1.1526 |
| GLB AGH25_LA Tech_4 |
0.2885 |
0.4578 |
42.76 |
0.63 |
0.5319 |
0.05 |
-0.6348 |
1.2118 |
| GLB AGH2_Hill Farm_1 |
-0.3502 |
0.4578 |
42.76 |
-0.77 |
0.4484 |
0.05 |
-1.2735 |
0.5731 |
| GLB AGH2_Hill Farm_2 |
0.2129 |
0.4578 |
42.76 |
0.47 |
0.6442 |
0.05 |
-0.7104 |
1.1362 |
| GLB AGH2_Hill Farm_3 |
0.2285 |
0.4578 |
42.76 |
0.50 |
0.6201 |
0.05 |
-0.6948 |
1.1518 |
| GLB AGH2_Hill Farm_4 |
-0.09127 |
0.4578 |
42.76 |
-0.20 |
0.8429 |
0.05 |
-1.0146 |
0.8320 |
| GLB AGH2_LA Tech_1 |
-0.5441 |
0.4578 |
42.76 |
-1.19 |
0.2412 |
0.05 |
-1.4673 |
0.3792 |
| GLB AGH2_LA Tech_2 |
-0.2853 |
0.4578 |
42.76 |
-0.62 |
0.5364 |
0.05 |
-1.2086 |
0.6380 |
| GLB AGH2_LA Tech_3 |
0.8694 |
0.4578 |
42.76 |
1.90 |
0.0643 |
0.05 |
-0.05387 |
1.7927 |
| GLB AGH2_LA Tech_4 |
-0.04006 |
0.4578 |
42.76 |
-0.09 |
0.9307 |
0.05 |
-0.9634 |
0.8832 |
| GLB AGHS1_Hill Farm_1 |
-0.4909 |
0.4578 |
42.76 |
-1.07 |
0.2896 |
0.05 |
-1.4142 |
0.4324 |
| GLB AGHS1_Hill Farm_2 |
0.5528 |
0.4578 |
42.76 |
1.21 |
0.2338 |
0.05 |
-0.3705 |
1.4761 |
| GLB AGHS1_Hill Farm_3 |
0.4166 |
0.4578 |
42.76 |
0.91 |
0.3679 |
0.05 |
-0.5067 |
1.3399 |
| GLB AGHS1_Hill Farm_4 |
-0.4785 |
0.4578 |
42.76 |
-1.05 |
0.3017 |
0.05 |
-1.4018 |
0.4448 |
| GLB AGHS1_LA Tech_1 |
-1.1449 |
0.4578 |
42.76 |
-2.50 |
0.0163 |
0.05 |
-2.0682 |
-0.2216 |
| GLB AGHS1_LA Tech_2 |
-0.2571 |
0.4578 |
42.76 |
-0.56 |
0.5772 |
0.05 |
-1.1804 |
0.6662 |
| GLB AGHS1_LA Tech_3 |
0.8501 |
0.4578 |
42.76 |
1.86 |
0.0702 |
0.05 |
-0.07321 |
1.7734 |
| GLB AGHS1_LA Tech_4 |
0.5519 |
0.4578 |
42.76 |
1.21 |
0.2346 |
0.05 |
-0.3714 |
1.4752 |
| GLB AGHS2_Hill Farm_1 |
-0.9490 |
0.4578 |
42.76 |
-2.07 |
0.0442 |
0.05 |
-1.8723 |
-0.02572 |
| GLB AGHS2_Hill Farm_2 |
0.3246 |
0.4578 |
42.76 |
0.71 |
0.4821 |
0.05 |
-0.5987 |
1.2479 |
| GLB AGHS2_Hill Farm_3 |
0.2169 |
0.4578 |
42.76 |
0.47 |
0.6381 |
0.05 |
-0.7064 |
1.1402 |
| GLB AGHS2_Hill Farm_4 |
0.4075 |
0.4578 |
42.76 |
0.89 |
0.3783 |
0.05 |
-0.5158 |
1.3308 |
| GLB AGHS2_LA Tech_1 |
-0.9095 |
0.4578 |
42.76 |
-1.99 |
0.0534 |
0.05 |
-1.8328 |
0.01377 |
| GLB AGHS2_LA Tech_2 |
0.06896 |
0.4578 |
42.76 |
0.15 |
0.8810 |
0.05 |
-0.8543 |
0.9923 |
| GLB AGHS2_LA Tech_3 |
0.7353 |
0.4578 |
42.76 |
1.61 |
0.1156 |
0.05 |
-0.1880 |
1.6586 |
| GLB AGHS2_LA Tech_4 |
0.1053 |
0.4578 |
42.76 |
0.23 |
0.8192 |
0.05 |
-0.8180 |
1.0286 |
| GLB AGHS3_Hill Farm_1 |
-0.4208 |
0.4578 |
42.76 |
-0.92 |
0.3631 |
0.05 |
-1.3441 |
0.5025 |
| GLB AGHS3_Hill Farm_2 |
-0.4823 |
0.4578 |
42.76 |
-1.05 |
0.2980 |
0.05 |
-1.4056 |
0.4410 |
| GLB AGHS3_Hill Farm_3 |
0.6032 |
0.4578 |
42.76 |
1.32 |
0.1946 |
0.05 |
-0.3201 |
1.5265 |
| GLB AGHS3_Hill Farm_4 |
0.2999 |
0.4578 |
42.76 |
0.66 |
0.5159 |
0.05 |
-0.6234 |
1.2232 |
| GLB AGHS3_LA Tech_1 |
-0.6954 |
0.4578 |
42.76 |
-1.52 |
0.1361 |
0.05 |
-1.6187 |
0.2279 |
| GLB AGHS3_LA Tech_2 |
-0.3490 |
0.4578 |
42.76 |
-0.76 |
0.4500 |
0.05 |
-1.2723 |
0.5743 |
| GLB AGHS3_LA Tech_3 |
0.9425 |
0.4578 |
42.76 |
2.06 |
0.0456 |
0.05 |
0.01919 |
1.8658 |
| GLB AGHS3_LA Tech_4 |
0.1019 |
0.4578 |
42.76 |
0.22 |
0.8249 |
0.05 |
-0.8214 |
1.0252 |
| GLB AGHS4_Hill Farm_1 |
-0.7912 |
0.4578 |
42.76 |
-1.73 |
0.0911 |
0.05 |
-1.7145 |
0.1321 |
| GLB AGHS4_Hill Farm_2 |
0.06875 |
0.4578 |
42.76 |
0.15 |
0.8813 |
0.05 |
-0.8545 |
0.9920 |
| GLB AGHS4_Hill Farm_3 |
0.005591 |
0.4578 |
42.76 |
0.01 |
0.9903 |
0.05 |
-0.9177 |
0.9289 |
| GLB AGHS4_Hill Farm_4 |
0.7168 |
0.4578 |
42.76 |
1.57 |
0.1247 |
0.05 |
-0.2065 |
1.6401 |
| GLB AGHS4_LA Tech_1 |
-0.5740 |
0.4578 |
42.76 |
-1.25 |
0.2167 |
0.05 |
-1.4973 |
0.3493 |
| GLB AGHS4_LA Tech_2 |
0.2233 |
0.4578 |
42.76 |
0.49 |
0.6281 |
0.05 |
-0.7000 |
1.1466 |
| GLB AGHS4_LA Tech_3 |
0.2200 |
0.4578 |
42.76 |
0.48 |
0.6332 |
0.05 |
-0.7033 |
1.1433 |
| GLB AGHS4_LA Tech_4 |
0.1306 |
0.4578 |
42.76 |
0.29 |
0.7768 |
0.05 |
-0.7927 |
1.0539 |
Slices
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
0.06438 |
0.4861 |
73.62 |
0.13 |
0.8950 |
1.0000 |
| AGH2 |
AGHS1 |
-0.5890 |
0.4861 |
73.62 |
-1.21 |
0.2295 |
0.8297 |
| AGH2 |
AGHS2 |
-0.9529 |
0.4861 |
73.62 |
-1.96 |
0.0537 |
0.3750 |
| AGH2 |
AGHS3 |
-0.3868 |
0.4861 |
73.62 |
-0.80 |
0.4287 |
0.9674 |
| AGH2 |
AGHS4 |
-0.2169 |
0.4861 |
73.62 |
-0.45 |
0.6567 |
0.9977 |
| AGH25 |
AGHS1 |
-0.6534 |
0.4861 |
73.62 |
-1.34 |
0.1830 |
0.7594 |
| AGH25 |
AGHS2 |
-1.0173 |
0.4861 |
73.62 |
-2.09 |
0.0398 |
0.3027 |
| AGH25 |
AGHS3 |
-0.4512 |
0.4861 |
73.62 |
-0.93 |
0.3563 |
0.9379 |
| AGH25 |
AGHS4 |
-0.2813 |
0.4861 |
73.62 |
-0.58 |
0.5646 |
0.9921 |
| AGHS1 |
AGHS2 |
-0.3639 |
0.4861 |
73.62 |
-0.75 |
0.4565 |
0.9750 |
| AGHS1 |
AGHS3 |
0.2023 |
0.4861 |
73.62 |
0.42 |
0.6786 |
0.9983 |
| AGHS1 |
AGHS4 |
0.3721 |
0.4861 |
73.62 |
0.77 |
0.4464 |
0.9724 |
| AGHS2 |
AGHS3 |
0.5661 |
0.4861 |
73.62 |
1.16 |
0.2479 |
0.8520 |
| AGHS2 |
AGHS4 |
0.7360 |
0.4861 |
73.62 |
1.51 |
0.1343 |
0.6564 |
| AGHS3 |
AGHS4 |
0.1699 |
0.4861 |
73.62 |
0.35 |
0.7277 |
0.9993 |
Year*Family Lines
| AGHS2 |
1.7861 |
A |
| Â |
 |
A |
| AGHS1 |
1.4222 |
A |
| Â |
 |
A |
| AGHS3 |
1.2199 |
A |
| Â |
 |
A |
| AGHS4 |
1.0501 |
A |
| Â |
 |
A |
| AGH2 |
0.8332 |
A |
| Â |
 |
A |
| AGH25 |
0.7688 |
A |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
0.1479 |
0.4861 |
73.62 |
0.30 |
0.7619 |
0.9996 |
| AGH2 |
AGHS1 |
-2.6354 |
0.4861 |
73.62 |
-5.42 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-3.0426 |
0.4861 |
73.62 |
-6.26 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-1.7339 |
0.4861 |
73.62 |
-3.57 |
0.0006 |
0.0082 |
| AGH2 |
AGHS4 |
-2.1311 |
0.4861 |
73.62 |
-4.38 |
<.0001 |
0.0005 |
| AGH25 |
AGHS1 |
-2.7833 |
0.4861 |
73.62 |
-5.73 |
<.0001 |
<.0001 |
| AGH25 |
AGHS2 |
-3.1904 |
0.4861 |
73.62 |
-6.56 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-1.8818 |
0.4861 |
73.62 |
-3.87 |
0.0002 |
0.0031 |
| AGH25 |
AGHS4 |
-2.2789 |
0.4861 |
73.62 |
-4.69 |
<.0001 |
0.0002 |
| AGHS1 |
AGHS2 |
-0.4072 |
0.4861 |
73.62 |
-0.84 |
0.4049 |
0.9594 |
| AGHS1 |
AGHS3 |
0.9015 |
0.4861 |
73.62 |
1.85 |
0.0677 |
0.4382 |
| AGHS1 |
AGHS4 |
0.5043 |
0.4861 |
73.62 |
1.04 |
0.3029 |
0.9036 |
| AGHS2 |
AGHS3 |
1.3087 |
0.4861 |
73.62 |
2.69 |
0.0088 |
0.0893 |
| AGHS2 |
AGHS4 |
0.9115 |
0.4861 |
73.62 |
1.88 |
0.0647 |
0.4256 |
| AGHS3 |
AGHS4 |
-0.3972 |
0.4861 |
73.62 |
-0.82 |
0.4165 |
0.9635 |
Year*Family Lines
| AGHS2 |
5.2601 |
A |
| Â |
 |
A |
| AGHS1 |
4.8530 |
A |
| Â |
 |
A |
| AGHS4 |
4.3486 |
A |
| Â |
 |
A |
| AGHS3 |
3.9514 |
A |
| Â |
 |
 |
| AGH2 |
2.2175 |
B |
| Â |
 |
B |
| AGH25 |
2.0697 |
B |
Year*Family F Test
Year*Family Diffs
| AGH2 |
AGH25 |
-0.4612 |
0.4861 |
73.62 |
-0.95 |
0.3459 |
0.9322 |
| AGH2 |
AGHS1 |
-2.7922 |
0.4861 |
73.62 |
-5.74 |
<.0001 |
<.0001 |
| AGH2 |
AGHS2 |
-3.1903 |
0.4861 |
73.62 |
-6.56 |
<.0001 |
<.0001 |
| AGH2 |
AGHS3 |
-2.1436 |
0.4861 |
73.62 |
-4.41 |
<.0001 |
0.0005 |
| AGH2 |
AGHS4 |
-2.1314 |
0.4861 |
73.62 |
-4.38 |
<.0001 |
0.0005 |
| AGH25 |
AGHS1 |
-2.3311 |
0.4861 |
73.62 |
-4.80 |
<.0001 |
0.0001 |
| AGH25 |
AGHS2 |
-2.7291 |
0.4861 |
73.62 |
-5.61 |
<.0001 |
<.0001 |
| AGH25 |
AGHS3 |
-1.6824 |
0.4861 |
73.62 |
-3.46 |
0.0009 |
0.0113 |
| AGH25 |
AGHS4 |
-1.6703 |
0.4861 |
73.62 |
-3.44 |
0.0010 |
0.0122 |
| AGHS1 |
AGHS2 |
-0.3981 |
0.4861 |
73.62 |
-0.82 |
0.4155 |
0.9631 |
| AGHS1 |
AGHS3 |
0.6486 |
0.4861 |
73.62 |
1.33 |
0.1862 |
0.7650 |
| AGHS1 |
AGHS4 |
0.6608 |
0.4861 |
73.62 |
1.36 |
0.1782 |
0.7507 |
| AGHS2 |
AGHS3 |
1.0467 |
0.4861 |
73.62 |
2.15 |
0.0346 |
0.2725 |
| AGHS2 |
AGHS4 |
1.0589 |
0.4861 |
73.62 |
2.18 |
0.0326 |
0.2606 |
| AGHS3 |
AGHS4 |
0.01218 |
0.4861 |
73.62 |
0.03 |
0.9801 |
1.0000 |
Year*Family Lines
| AGHS2 |
4.4584 |
A |
| Â |
 |
A |
| AGHS1 |
4.0603 |
A |
| Â |
 |
A |
| AGHS3 |
3.4117 |
A |
| Â |
 |
A |
| AGHS4 |
3.3995 |
A |
| Â |
 |
 |
| AGH25 |
1.7292 |
B |
| Â |
 |
B |
| AGH2 |
1.2681 |
B |
Survival rates
Sur1 <- ggplot(hane_survival_year,
aes(x = Survival, y = Rate, fill = Survival, Color = Survival)) +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 100), breaks = c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("green4", "red3"), 0.5)) +
labs(title = "Survival Rate by Growing Season") +
xlab("") +
ylab("Survival rate (%)") +
facet_wrap( ~ Year) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Sur1)
Sur2 <- ggplot(hane_survival_year_family,
aes(x = Family, y = Rate, fill = Survival, color = Survival)) +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 100), breaks = c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("green4", "red3"), 0.5)) +
labs(title = "Survival Rate by Growing Season and Family") +
xlab("") +
ylab("Survival rate (%)") +
facet_wrap( ~ Year) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Sur2)
Sur3 <- ggplot(hane_survival_year_location,
aes(x = Location, y = Rate, fill = Survival, Color = Survival)) +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 100), breaks = c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("green4", "red3"), 0.5)) +
labs(title = "Survival Rate by Growing Season and Location") +
xlab("") +
ylab("Survival rate (%)") +
facet_wrap( ~ Year) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Sur3)
Sur4 <- ggplot(hane_survival_year_location_family,
aes(x = Family, y = Rate, fill = Survival, color = Survival)) +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 100), breaks = c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("green4", "red3"), 0.5)) +
labs(title = "Survival Rate by Growing Season, Location, and Family") +
xlab("") +
ylab("Survival rate (%)") +
facet_wrap( ~ ID, ncol = 3) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Sur4)
GLD
Fig1 <- ggplot(hane_gld,
aes(x = Family, y = GLD, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 60), breaks = c(0, 10, 20, 30, 40, 50, 60), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "GLD: Family Effect") +
xlab("Family") +
ylab("GLD (mm)") +
annotate("text",
x = c(1, 2, 3, 4, 5, 6),
y = c(50),
label = c("b", "ab", "a", "a", "ab", "ab")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig1)
Fig2 <- ggplot(hane_gld,
aes(x = Year, y = GLD, fill = Location, color = Location)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 70), breaks = c(0, 10, 20, 30, 40, 50, 60, 70), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#000000", "#999999"), 0.5)) +
labs(title = "GLD: Year * Location") +
xlab("Growing Season") +
ylab("GLD (mm)") +
annotate("text",
x = c(1.78, 2.22, 2.78, 3.22),
y = c(20, 20, 55, 50),
label = c("b", "a", "a", "b")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig2)
Fig3 <- ggplot(hane_gld,
aes(x = Year, y = GLD, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 80), breaks = c(0, 10, 20, 30, 40, 50, 60, 70, 80), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "GLD: Year * Family") +
xlab("Growing Season") +
ylab("GLD (mm)") +
annotate("text",
x = c(2.62, 2.78, 2.93, 3.08, 3.22, 3.38),
y = c(45, 50, 55, 60, 55, 55),
label = c("b", "b", "a", "a", "a", "a")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig3)
Height
Fig4 <- ggplot(hane_ht,
aes(x = Family, y = Height, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 12), breaks = c(0, 2, 4, 6, 8, 10, 12), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "Height: Year * Location") +
xlab("Family") +
ylab("Height (m)") +
annotate("text",
x = c(1, 2, 3, 4, 5, 6),
y = c(10),
label = c("d", "cd", "a", "a", "bc", "ab")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig4)
Fig5 <- ggplot(hane_ht,
aes(x = Year, y = Height, fill = Location, color = Location)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 12), breaks = c(0, 2, 4, 6, 8, 10, 12), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#000000", "#999999"), 0.5)) +
labs(title = "Height: Year * Location" ) +
xlab("Growing Season") +
ylab("Height (m)") +
annotate("text",
x = c(3.78, 4.22, 4.78, 5.22, 5.78, 6.22, 6.78, 7.22),
y = c(5, 4, 7, 5.5, 8.5, 7.5, 11, 7.5),
label = c("a", "b", "a", "b", "a", "b", "a", "b")) +
theme_classic()
plotly::ggplotly(Fig5)
Fig6 <- ggplot(hane_ht,
aes(x = Year, y = Height, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 12), breaks = c(0, 2, 4, 6, 8, 10, 12), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "Height: Year * Family") +
xlab("Growing Season") +
ylab("Height (m)") +
annotate("text",
x = c(2.63, 2.77, 2.92, 3.06, 3.22, 3.38,
3.63, 3.77, 3.92, 4.06, 4.22, 4.38,
4.63, 4.77, 4.92, 5.06, 5.22, 5.38,
5.63, 5.77, 5.92, 6.06, 6.22, 6.38,
6.63, 6.77, 6.92, 7.06, 7.22, 7.38,
7.63, 7.77, 7.92, 8.06, 8.22, 8.38
),
y = c(2.2, 2.5, 3, 3.3, 2.7, 2.9,
3.1, 3.3, 4.3, 4.5, 3.7, 3.9,
5, 5.5, 6.5, 6.8, 5.9, 6.2,
6.5, 7, 8.1, 8.4, 7.4, 7.8,
7.7, 8.5, 10.4, 10.4, 9.8, 10.2,
9.3, 9.2, 10.5, 10.4, 10, 10.3
),
label = c("c", "bc", "a", "a", "abc", "ab",
"c", "bc", "a", "a", "bc", "ab",
"d", "cd", "ab", "a", "bc", "ab",
"c", "bc", "a", "a", "b", "a",
"c", "c", "a", "a", "b", "ab",
"dc", "d", "a", "a", "bc", "ab"
)) +
theme_classic()
plotly::ggplotly(Fig6)
DBH
Fig7 <- ggplot(hane_dbh,
aes(x = Family, y = DBH, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 20), breaks = c(0, 5, 10, 15, 20), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "DBH: Family Effect") +
xlab("Family") +
ylab("DBH (cm)") +
annotate("text",
x = c(1, 2, 3, 4, 5, 6),
y = c(15),
label = c("d", "cd", "b", "b", "cb", "a")) +
theme_classic()
plotly::ggplotly(Fig7)
Fig8 <- ggplot(hane_dbh,
aes(x = Year, y = DBH, fill = Location, color = Location)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 20), breaks = c(0, 5, 10, 15, 20), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#000000", "#999999"), 0.5)) +
labs(title = "DBH: Year * Location" ) +
xlab("Growing Season") +
ylab("DBH (cm)") +
annotate("text",
x = c(0.78, 1.22, 1.78, 2.22, 2.78, 3.22, 3.78, 4.22, 4.78, 5.22),
y = c(5, 4, 8, 7, 11, 10, 13, 12, 14, 13),
label = c("a", "b", "a", "b", "a", "b", "a", "b", "a", "b")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig8)
Fig9 <- ggplot(hane_dbh,
aes(x = Year, y = DBH, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 20), breaks = c(0, 5, 10, 15, 20), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "DBH: Year * Family") +
xlab("Growing Season") +
ylab("DBH (cm)") +
annotate("text",
x = c(0.63, 0.77, 0.92, 1.06, 1.22, 1.38,
1.63, 1.77, 1.92, 2.06, 2.22, 2.38,
2.63, 2.77, 2.92, 3.06, 3.22, 3.38,
3.63, 3.77, 3.92, 4.06, 4.22, 4.38,
4.63, 4.77, 4.92, 5.06, 5.22, 5.38
),
y = c(3.2, 3.5, 5, 5.3, 4.7, 4.9,
6.1, 6.3, 7.8, 7.9, 7.5, 8.5,
8.9, 9.3, 10.1, 10.2, 10.8, 11.8,
11.1, 11.3, 11.9, 12.3, 12.8, 13.2,
12.7, 12.7, 12.9, 13.1, 13.5, 14.7
),
label = c("c", "c", "ab", "a", "bc", "a",
"d", "cd", "b", "b", "bc", "a",
"c", "c", "b", "b", "b", "a",
"d", "cd", "bcd", "bc", "b", "a",
"b", "b", "b", "b", "b", "a"
)) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig9)
Crown
Fig10 <- ggplot(hane_crown,
aes(x = Family, y = Crown, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 10), breaks = c(0, 2, 4, 6, 8, 10), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "Crown Height: Family Effect") +
xlab("Family") +
ylab("Crown Height (m)") +
annotate("text",
x = c(1, 2, 3, 4, 5, 6),
y = c(8),
label = c("b", "b", "a", "a", "a", "a")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig10)
Fig11 <- ggplot(hane_crown,
aes(x = Year, y = Crown, fill = Location, color = Location)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 10), breaks = c(0, 2, 4, 6, 8, 10), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#000000", "#999999"), 0.5)) +
labs(title = "Crown Height: Year * Location" ) +
xlab("Growing Season") +
ylab("Crown Height (m)") +
annotate("text",
x = c(0.78, 1.22, 1.78, 2.22, 2.78, 3.22),
y = c(3.2, 1.7, 6.5, 4, 7.3, 5),
label = c("a", "b", "a", "b", "a", "b")) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig11)
Fig12 <- ggplot(hane_crown,
aes(x = Year, y = Crown, fill = Family, color = Family)) +
stat_summary(fun.data = mean_sd, geom = "errorbar", position = position_dodge(0.9), width = 0.2, color = "grey") +
stat_summary(fun = mean, geom = "bar", position = "dodge") +
font("title", size = 22) +
font("xlab", size = 18) +
font("ylab", size = 18) +
font("xy.text", size = 16) +
scale_y_continuous(limits = c(0, 10), breaks = c(0, 2, 4, 6, 8, 10), expand = c(0,0)) +
scale_fill_manual(values = alpha(c("#E69F00", "#56B4E9", "#009E73",
"#F0E442", "#D55E00", "#CC79A7"), 0.5)) +
labs(title = "Crown Height: Year * Family") +
xlab("Growing Season") +
ylab("Crown Height (m)") +
annotate("text",
x = c(1.63, 1.77, 1.92, 2.06, 2.22, 2.36,
2.63, 2.77, 2.92, 3.06, 3.22, 3.36
),
y = c(2.5, 3.4, 6, 6.5, 5.5, 5.7,
4, 3.9, 7.2, 7.3, 6.1, 6.6
),
label = c("b", "b", "a", "a", "a", "a",
"b", "b", "a", "a", "a", "a"
)) +
guides(fill = "none") +
theme_classic()
plotly::ggplotly(Fig12)